miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 105010 1.1 0.003201
Target:  5'- uGCAGCAGCGCGACGAAAACGCCACGUg -3'
miRNA:   3'- -CGUCGUCGCGCUGCUUUUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 120740 0.75 0.511651
Target:  5'- aGCuGCGGCGCcgaGACGggGccguguccagggcgcGCGCCACGc -3'
miRNA:   3'- -CGuCGUCGCG---CUGCuuU---------------UGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 18344 0.74 0.547927
Target:  5'- uGCAGCAGCuCGGCauGGACGCCAaCGg -3'
miRNA:   3'- -CGUCGUCGcGCUGcuUUUGCGGU-GCa -5'
6751 3' -54.2 NC_001875.2 + 83794 0.66 0.946784
Target:  5'- uGUAGCGcGCGCccucgugccuGugGGcgGCGgCCACGUg -3'
miRNA:   3'- -CGUCGU-CGCG----------CugCUuuUGC-GGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 69815 0.82 0.208628
Target:  5'- cGCAGCAGCGCGAUGgcGACaUCGCGUu -3'
miRNA:   3'- -CGUCGUCGCGCUGCuuUUGcGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 3067 0.82 0.213947
Target:  5'- cGCAGCGGCGCGcCGggGuCGcCCACGg -3'
miRNA:   3'- -CGUCGUCGCGCuGCuuUuGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 43597 0.78 0.338353
Target:  5'- gGCGGCAGCgGCGGCGc--GCGCCGCu- -3'
miRNA:   3'- -CGUCGUCG-CGCUGCuuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 100882 0.78 0.346181
Target:  5'- cGCAGCGcGCGCGugG---GCGCCAUGg -3'
miRNA:   3'- -CGUCGU-CGCGCugCuuuUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 113368 0.77 0.395832
Target:  5'- cGCuGCGGCGCGGCGcAAAAaaggugUGCCGCGg -3'
miRNA:   3'- -CGuCGUCGCGCUGC-UUUU------GCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 129968 0.75 0.497809
Target:  5'- gGCGGCGGCgGCGGCGGcgGCGgCAUGc -3'
miRNA:   3'- -CGUCGUCG-CGCUGCUuuUGCgGUGCa -5'
6751 3' -54.2 NC_001875.2 + 108868 0.76 0.431385
Target:  5'- uGCAGUcgcuggaaAGCGCGGCGGAGgcguacaugGCGCCGCa- -3'
miRNA:   3'- -CGUCG--------UCGCGCUGCUUU---------UGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 38607 0.77 0.384691
Target:  5'- aGCGGCGGaCGCGACagcuuguacaguugGGAcaguGACGCCGCGUa -3'
miRNA:   3'- -CGUCGUC-GCGCUG--------------CUU----UUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 46514 0.83 0.174517
Target:  5'- cGCGGCgGGCGgGGCGAGAGCGcCCGCGg -3'
miRNA:   3'- -CGUCG-UCGCgCUGCUUUUGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 93783 0.76 0.431385
Target:  5'- gGCGGCAGCGCaaaaagugGAUGAugGCGUCAUGUc -3'
miRNA:   3'- -CGUCGUCGCG--------CUGCUuuUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 33032 0.83 0.179067
Target:  5'- aGC-GCAGCGCGGCGG--GCGCCGCGc -3'
miRNA:   3'- -CGuCGUCGCGCUGCUuuUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 81068 0.78 0.354139
Target:  5'- uGguGCGcCGCGACGAGAAgaGCCGCGUg -3'
miRNA:   3'- -CguCGUcGCGCUGCUUUUg-CGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 130115 0.76 0.468737
Target:  5'- gGCGGCGGCGCGAcCGGugucGCGCC-CGc -3'
miRNA:   3'- -CGUCGUCGCGCU-GCUuu--UGCGGuGCa -5'
6751 3' -54.2 NC_001875.2 + 19948 0.74 0.537761
Target:  5'- aGCGGcCGGCGCGACGGuccggccGGCGCCuCGc -3'
miRNA:   3'- -CGUC-GUCGCGCUGCUu------UUGCGGuGCa -5'
6751 3' -54.2 NC_001875.2 + 36100 0.83 0.188484
Target:  5'- cGCGGCAGCacGCGGCGGcgGCGCCGCu- -3'
miRNA:   3'- -CGUCGUCG--CGCUGCUuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 66113 0.79 0.308334
Target:  5'- cGCGGCGG-GCGGCGAGgcGGCGCCGCc- -3'
miRNA:   3'- -CGUCGUCgCGCUGCUU--UUGCGGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.