miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 7101 0.67 0.890069
Target:  5'- uGCAGCGcGCGCuGGcCGAcauuGAcCGCCACGc -3'
miRNA:   3'- -CGUCGU-CGCG-CU-GCU----UUuGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 7259 0.7 0.773115
Target:  5'- uGCAGCGGCcUGGCGcgGGuCGCCgACGUg -3'
miRNA:   3'- -CGUCGUCGcGCUGCuuUU-GCGG-UGCA- -5'
6751 3' -54.2 NC_001875.2 + 7567 0.68 0.883055
Target:  5'- gGCGGCGGguCGuCGACGAccaacGCGCCGCc- -3'
miRNA:   3'- -CGUCGUC--GC-GCUGCUuu---UGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 10153 0.69 0.836296
Target:  5'- --cGCaAGCGCGGCGugGugGCCgACGa -3'
miRNA:   3'- cguCG-UCGCGCUGCuuUugCGG-UGCa -5'
6751 3' -54.2 NC_001875.2 + 10274 0.67 0.903382
Target:  5'- -gAGCAGCGCG-CGA----GCUACGUu -3'
miRNA:   3'- cgUCGUCGCGCuGCUuuugCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 10443 0.7 0.791963
Target:  5'- cGCAGCAGCuuugacGCGGCGc-GGCGgCGCGc -3'
miRNA:   3'- -CGUCGUCG------CGCUGCuuUUGCgGUGCa -5'
6751 3' -54.2 NC_001875.2 + 10869 0.66 0.932371
Target:  5'- cGCGGUGGcCGCGuCGguGGCGCUGCc- -3'
miRNA:   3'- -CGUCGUC-GCGCuGCuuUUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 10970 0.68 0.875809
Target:  5'- cGCaAGCGGCcugcagucaaGCGACGAA-GCGCUGCa- -3'
miRNA:   3'- -CG-UCGUCG----------CGCUGCUUuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 11071 0.67 0.909675
Target:  5'- aGCAGUuuGGCGUGGCGc--GCGcCCugGa -3'
miRNA:   3'- -CGUCG--UCGCGCUGCuuuUGC-GGugCa -5'
6751 3' -54.2 NC_001875.2 + 11882 0.71 0.723868
Target:  5'- uGCGGCAGCGCGuguuagaguuguGCGcGAACgGCgGCGa -3'
miRNA:   3'- -CGUCGUCGCGC------------UGCuUUUG-CGgUGCa -5'
6751 3' -54.2 NC_001875.2 + 11932 0.66 0.942226
Target:  5'- uGCGcGCGGCGCGcCGAcuGUGCgCGCGa -3'
miRNA:   3'- -CGU-CGUCGCGCuGCUuuUGCG-GUGCa -5'
6751 3' -54.2 NC_001875.2 + 12367 0.68 0.868336
Target:  5'- -aAGCc-CGaCGACGAGggUGCCACGg -3'
miRNA:   3'- cgUCGucGC-GCUGCUUuuGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 12967 0.67 0.896846
Target:  5'- cGCGGCGG-GCGugGGcuccGCGCCGUGg -3'
miRNA:   3'- -CGUCGUCgCGCugCUuu--UGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 13804 0.67 0.896846
Target:  5'- -gGGUGGCGCGGCGuuGcCGUCGCa- -3'
miRNA:   3'- cgUCGUCGCGCUGCuuUuGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 13906 0.66 0.932371
Target:  5'- cGCGGCGGCGCGcACGccGGC-CUGCa- -3'
miRNA:   3'- -CGUCGUCGCGC-UGCuuUUGcGGUGca -5'
6751 3' -54.2 NC_001875.2 + 14948 0.71 0.703524
Target:  5'- cGCGGCuAGCGCaGACGAAGAguugUGCCGuCGc -3'
miRNA:   3'- -CGUCG-UCGCG-CUGCUUUU----GCGGU-GCa -5'
6751 3' -54.2 NC_001875.2 + 15651 0.69 0.836296
Target:  5'- -aGGCGGUGCaGACGc--ACGCCACa- -3'
miRNA:   3'- cgUCGUCGCG-CUGCuuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 16763 0.67 0.915722
Target:  5'- cCGGCGuCGUGACugc-GCGCCGCGUa -3'
miRNA:   3'- cGUCGUcGCGCUGcuuuUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 16898 0.72 0.651732
Target:  5'- cGCAGCGGCGCcGCGAuguCGCUgauugugcugACGUa -3'
miRNA:   3'- -CGUCGUCGCGcUGCUuuuGCGG----------UGCA- -5'
6751 3' -54.2 NC_001875.2 + 16939 0.7 0.773115
Target:  5'- cGCAuCGGCGCGuu----GCGCCACGUg -3'
miRNA:   3'- -CGUcGUCGCGCugcuuuUGCGGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.