miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 38607 0.77 0.384691
Target:  5'- aGCGGCGGaCGCGACagcuuguacaguugGGAcaguGACGCCGCGUa -3'
miRNA:   3'- -CGUCGUC-GCGCUG--------------CUU----UUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 113368 0.77 0.395832
Target:  5'- cGCuGCGGCGCGGCGcAAAAaaggugUGCCGCGg -3'
miRNA:   3'- -CGuCGUCGCGCUGC-UUUU------GCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 92650 0.77 0.413373
Target:  5'- uGUAGCGGCGCacCGuAAACGCCACGc -3'
miRNA:   3'- -CGUCGUCGCGcuGCuUUUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 109952 0.77 0.416938
Target:  5'- cGgAGCAGCGCGACGuguacgacaaguacaAGuuUGCCACGUa -3'
miRNA:   3'- -CgUCGUCGCGCUGC---------------UUuuGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 93783 0.76 0.431385
Target:  5'- gGCGGCAGCGCaaaaagugGAUGAugGCGUCAUGUc -3'
miRNA:   3'- -CGUCGUCGCG--------CUGCUuuUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 108868 0.76 0.431385
Target:  5'- uGCAGUcgcuggaaAGCGCGGCGGAGgcguacaugGCGCCGCa- -3'
miRNA:   3'- -CGUCG--------UCGCGCUGCUUU---------UGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 100905 0.76 0.440561
Target:  5'- cGCcGCAGCGCG-CGGAGACGCguCGc -3'
miRNA:   3'- -CGuCGUCGCGCuGCUUUUGCGguGCa -5'
6751 3' -54.2 NC_001875.2 + 4284 0.76 0.449848
Target:  5'- uGCAGCAGCGCGcCGAucaaGCaCGCGg -3'
miRNA:   3'- -CGUCGUCGCGCuGCUuuugCG-GUGCa -5'
6751 3' -54.2 NC_001875.2 + 110076 0.76 0.449848
Target:  5'- cGCAGagacgcuGCGCGugGAGGcCGCCACGc -3'
miRNA:   3'- -CGUCgu-----CGCGCugCUUUuGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 83016 0.76 0.459241
Target:  5'- uCAGCuggaccGCGCGcaGCGAGuGCGCCACGUg -3'
miRNA:   3'- cGUCGu-----CGCGC--UGCUUuUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 49582 0.76 0.459241
Target:  5'- aGCAGCuGCGCGcCGAcGAGCGCUACc- -3'
miRNA:   3'- -CGUCGuCGCGCuGCU-UUUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 130115 0.76 0.468737
Target:  5'- gGCGGCGGCGCGAcCGGugucGCGCC-CGc -3'
miRNA:   3'- -CGUCGUCGCGCU-GCUuu--UGCGGuGCa -5'
6751 3' -54.2 NC_001875.2 + 55314 0.76 0.468737
Target:  5'- cGCGGCAguggcGCGCGACGGugaugacGCGCCGCu- -3'
miRNA:   3'- -CGUCGU-----CGCGCUGCUuu-----UGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 57340 0.75 0.488026
Target:  5'- gGCAGCGcugcGCGCGGCGAAAcCGCaagUACGUg -3'
miRNA:   3'- -CGUCGU----CGCGCUGCUUUuGCG---GUGCA- -5'
6751 3' -54.2 NC_001875.2 + 129968 0.75 0.497809
Target:  5'- gGCGGCGGCgGCGGCGGcgGCGgCAUGc -3'
miRNA:   3'- -CGUCGUCG-CGCUGCUuuUGCgGUGCa -5'
6751 3' -54.2 NC_001875.2 + 98803 0.75 0.497809
Target:  5'- cGC-GCGGCGCGGCGcc--CGCCGCGc -3'
miRNA:   3'- -CGuCGUCGCGCUGCuuuuGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 18161 0.75 0.507679
Target:  5'- uGCGGCGcGCGCGACGc---CGCCACuGUg -3'
miRNA:   3'- -CGUCGU-CGCGCUGCuuuuGCGGUG-CA- -5'
6751 3' -54.2 NC_001875.2 + 120740 0.75 0.511651
Target:  5'- aGCuGCGGCGCcgaGACGggGccguguccagggcgcGCGCCACGc -3'
miRNA:   3'- -CGuCGUCGCG---CUGCuuU---------------UGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 19948 0.74 0.537761
Target:  5'- aGCGGcCGGCGCGACGGuccggccGGCGCCuCGc -3'
miRNA:   3'- -CGUC-GUCGCGCUGCUu------UUGCGGuGCa -5'
6751 3' -54.2 NC_001875.2 + 34932 0.74 0.547927
Target:  5'- gGguGCGGCGUGAcaacaaccCGGAGcuguACGCCACGg -3'
miRNA:   3'- -CguCGUCGCGCU--------GCUUU----UGCGGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.