miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 5' -58.8 NC_001875.2 + 46622 0.67 0.739324
Target:  5'- cGACaugcgGCGCUACCgCgCGGCGGCcCGUCg -3'
miRNA:   3'- cCUG-----UGUGGUGG-GaGCUGCCGcGCAG- -5'
6751 5' -58.8 NC_001875.2 + 108693 0.67 0.729727
Target:  5'- --cCGCAgCCGCCCuUCGACuGCGCG-Ca -3'
miRNA:   3'- ccuGUGU-GGUGGG-AGCUGcCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 6991 0.67 0.729727
Target:  5'- cGGGCAUcUUugCUUCGACguGGCGCGcCa -3'
miRNA:   3'- -CCUGUGuGGugGGAGCUG--CCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 81834 0.67 0.729727
Target:  5'- cGACACGCgCGCCCcaaccgCGACaagcGCcGCGUCa -3'
miRNA:   3'- cCUGUGUG-GUGGGa-----GCUGc---CG-CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 37114 0.67 0.72005
Target:  5'- cGGGCGCGgCGCCg-CGcCGGCguuuGCGUCu -3'
miRNA:   3'- -CCUGUGUgGUGGgaGCuGCCG----CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 29070 0.67 0.72005
Target:  5'- cGGGCGugUugCugCC---ACGGCGCGUCg -3'
miRNA:   3'- -CCUGU--GugGugGGagcUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 36666 0.67 0.72005
Target:  5'- -uGCGCGCUGagCUCGG-GGCGCGUCa -3'
miRNA:   3'- ccUGUGUGGUggGAGCUgCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 48517 0.67 0.72005
Target:  5'- uGGCGCGCCGCCC--GGCGcGCGCc-- -3'
miRNA:   3'- cCUGUGUGGUGGGagCUGC-CGCGcag -5'
6751 5' -58.8 NC_001875.2 + 96830 0.67 0.72005
Target:  5'- uGGACguuAUGCgCGCCUuguUUGACGGCGCG-Cg -3'
miRNA:   3'- -CCUG---UGUG-GUGGG---AGCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 100283 0.67 0.714208
Target:  5'- -uGCACGCgACCUUCGcgcaaacaauacacaAUGaGCGCGUCg -3'
miRNA:   3'- ccUGUGUGgUGGGAGC---------------UGC-CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 88983 0.67 0.7103
Target:  5'- cGGAC-CugCGCCU---GCGGCGCGcCg -3'
miRNA:   3'- -CCUGuGugGUGGGagcUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 15264 0.67 0.7103
Target:  5'- -uGCGCACCACC---GGCGGCGUGg- -3'
miRNA:   3'- ccUGUGUGGUGGgagCUGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 21665 0.67 0.7103
Target:  5'- cGGACgagcgcagugcgACGCCGCCC--GACGaGCGCGa- -3'
miRNA:   3'- -CCUG------------UGUGGUGGGagCUGC-CGCGCag -5'
6751 5' -58.8 NC_001875.2 + 55511 0.67 0.7103
Target:  5'- uGGCGCAgCACCugCUCGAUGGCGgcUCg -3'
miRNA:   3'- cCUGUGUgGUGG--GAGCUGCCGCgcAG- -5'
6751 5' -58.8 NC_001875.2 + 48036 0.67 0.7103
Target:  5'- uGGC-CGCCGCCCacaggcaCGAgGGCGCG-Cg -3'
miRNA:   3'- cCUGuGUGGUGGGa------GCUgCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 54748 0.67 0.7103
Target:  5'- cGGGCGCACCGCCggcaccgCcagcgcaaacagGACGGCGCa-- -3'
miRNA:   3'- -CCUGUGUGGUGGga-----G------------CUGCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 55854 0.67 0.709321
Target:  5'- cGGACACGCUugagcacGCCgaCUCGAcuaCGGCGCa-- -3'
miRNA:   3'- -CCUGUGUGG-------UGG--GAGCU---GCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 99363 0.68 0.704419
Target:  5'- uGGGCGCGCCcgccaaguggccaaaGCgCCgcacCGGCGGCGCcagcggGUCg -3'
miRNA:   3'- -CCUGUGUGG---------------UG-GGa---GCUGCCGCG------CAG- -5'
6751 5' -58.8 NC_001875.2 + 82965 0.68 0.700486
Target:  5'- aGGACACAaCACuacguuuuCCUCG-CGGCGCcgcucGUCg -3'
miRNA:   3'- -CCUGUGUgGUG--------GGAGCuGCCGCG-----CAG- -5'
6751 5' -58.8 NC_001875.2 + 124389 0.68 0.700486
Target:  5'- cGGCcguACACCGCCgcaaUCGcCGGCGCG-Ca -3'
miRNA:   3'- cCUG---UGUGGUGGg---AGCuGCCGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.