miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 5' -58.8 NC_001875.2 + 83573 0.66 0.776727
Target:  5'- cGGACACAUgAggugUCC-CGGCGGgGCGcCg -3'
miRNA:   3'- -CCUGUGUGgU----GGGaGCUGCCgCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 99002 0.66 0.776727
Target:  5'- cGGCACcagguuuugguGCCACgCUCGcaaGCGGCGcCGUUc -3'
miRNA:   3'- cCUGUG-----------UGGUGgGAGC---UGCCGC-GCAG- -5'
6751 5' -58.8 NC_001875.2 + 74630 0.66 0.776727
Target:  5'- cGGcuGCACugCGCUgUCGGCaGCGUGcCa -3'
miRNA:   3'- -CC--UGUGugGUGGgAGCUGcCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 3815 0.66 0.776727
Target:  5'- cGAC-CACCgGCCgUCGuCGGCGCa-- -3'
miRNA:   3'- cCUGuGUGG-UGGgAGCuGCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 36636 0.66 0.776727
Target:  5'- cGGCACACgaGCUUgaaGAUGGCcGCGUCg -3'
miRNA:   3'- cCUGUGUGg-UGGGag-CUGCCG-CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 109003 0.66 0.767541
Target:  5'- uGGACGCguacgucguGCCGCC---GACGGUGcCGUCg -3'
miRNA:   3'- -CCUGUG---------UGGUGGgagCUGCCGC-GCAG- -5'
6751 5' -58.8 NC_001875.2 + 93340 0.66 0.767541
Target:  5'- cGACaccaGCACCACCUugUCGuCGGgaGUGUCg -3'
miRNA:   3'- cCUG----UGUGGUGGG--AGCuGCCg-CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 3540 0.66 0.767541
Target:  5'- uGGCGCACguCACCggCGccgUGGCGCGUCu -3'
miRNA:   3'- cCUGUGUG--GUGGgaGCu--GCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 55074 0.67 0.758239
Target:  5'- uGGCGCugUAgCaCUCGGCcaGCGCGUCc -3'
miRNA:   3'- cCUGUGugGUgG-GAGCUGc-CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 77614 0.67 0.748831
Target:  5'- aGGACaACAuguugugcuUCACCgUCGACGGCcugcacguGUGUCu -3'
miRNA:   3'- -CCUG-UGU---------GGUGGgAGCUGCCG--------CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 54942 0.67 0.748831
Target:  5'- uGGGCGcCGCC-CCUUUG-CGcGCGCGUUu -3'
miRNA:   3'- -CCUGU-GUGGuGGGAGCuGC-CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 85214 0.67 0.748831
Target:  5'- cGGGCcgccgcgcgguaGCGCCGCaUgUCGACGaGCGCGg- -3'
miRNA:   3'- -CCUG------------UGUGGUG-GgAGCUGC-CGCGCag -5'
6751 5' -58.8 NC_001875.2 + 91766 0.67 0.747884
Target:  5'- ---aGCGCCGCggCCUCGucguaguGCGGCGUGUUg -3'
miRNA:   3'- ccugUGUGGUG--GGAGC-------UGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 94738 0.67 0.747884
Target:  5'- cGGCGCcgcgcccGCaCACCCacgCGGCGGUGuCGUCc -3'
miRNA:   3'- cCUGUG-------UG-GUGGGa--GCUGCCGC-GCAG- -5'
6751 5' -58.8 NC_001875.2 + 22918 0.67 0.745989
Target:  5'- cGGGCAgCGCCGCUUuaaugUCGuccaccaacgcguuaGGCGCGUCa -3'
miRNA:   3'- -CCUGU-GUGGUGGG-----AGCug-------------CCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 85269 0.67 0.740279
Target:  5'- cGGACACGagCGCCCcgaacacgguuugcgCgGGCGGCGCGg- -3'
miRNA:   3'- -CCUGUGUg-GUGGGa--------------G-CUGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 45221 0.67 0.739324
Target:  5'- -uACACGUCGCgCgcgaacaGGCGGCGCGUCg -3'
miRNA:   3'- ccUGUGUGGUGgGag-----CUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 46622 0.67 0.739324
Target:  5'- cGACaugcgGCGCUACCgCgCGGCGGCcCGUCg -3'
miRNA:   3'- cCUG-----UGUGGUGG-GaGCUGCCGcGCAG- -5'
6751 5' -58.8 NC_001875.2 + 82297 0.67 0.739324
Target:  5'- -aACACGaCGCCCUgGcGCGGCGCG-Ca -3'
miRNA:   3'- ccUGUGUgGUGGGAgC-UGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 39307 0.67 0.739324
Target:  5'- -cGCGCugCACaCCgugcCGGCGGCGUG-Cg -3'
miRNA:   3'- ccUGUGugGUG-GGa---GCUGCCGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.