miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 5' -58.8 NC_001875.2 + 74630 0.66 0.776727
Target:  5'- cGGcuGCACugCGCUgUCGGCaGCGUGcCa -3'
miRNA:   3'- -CC--UGUGugGUGGgAGCUGcCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 83573 0.66 0.776727
Target:  5'- cGGACACAUgAggugUCC-CGGCGGgGCGcCg -3'
miRNA:   3'- -CCUGUGUGgU----GGGaGCUGCCgCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 78343 0.66 0.776727
Target:  5'- -cGCGCACCGagUCCUUGA--GCGCGUCc -3'
miRNA:   3'- ccUGUGUGGU--GGGAGCUgcCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 36636 0.66 0.776727
Target:  5'- cGGCACACgaGCUUgaaGAUGGCcGCGUCg -3'
miRNA:   3'- cCUGUGUGg-UGGGag-CUGCCG-CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 91426 0.66 0.783986
Target:  5'- uGGGC-CGCaGCUCgcuguagcugagCGGCGGCGCGUg -3'
miRNA:   3'- -CCUGuGUGgUGGGa-----------GCUGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 42559 0.66 0.784888
Target:  5'- uGGuCGCGCCcagccgcGCCaggUCGGCGcacgcGCGCGUCa -3'
miRNA:   3'- -CCuGUGUGG-------UGGg--AGCUGC-----CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 128805 0.66 0.785788
Target:  5'- -uACGCGCUGCCCa--ACGGCGUGUa -3'
miRNA:   3'- ccUGUGUGGUGGGagcUGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 94240 0.66 0.785788
Target:  5'- -aGCACGCCGCCgUgCGGcCGGcCGCGg- -3'
miRNA:   3'- ccUGUGUGGUGGgA-GCU-GCC-GCGCag -5'
6751 5' -58.8 NC_001875.2 + 82297 0.67 0.739324
Target:  5'- -aACACGaCGCCCUgGcGCGGCGCG-Ca -3'
miRNA:   3'- ccUGUGUgGUGGGAgC-UGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 39307 0.67 0.739324
Target:  5'- -cGCGCugCACaCCgugcCGGCGGCGUG-Cg -3'
miRNA:   3'- ccUGUGugGUG-GGa---GCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 77614 0.67 0.748831
Target:  5'- aGGACaACAuguugugcuUCACCgUCGACGGCcugcacguGUGUCu -3'
miRNA:   3'- -CCUG-UGU---------GGUGGgAGCUGCCG--------CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 85214 0.67 0.748831
Target:  5'- cGGGCcgccgcgcgguaGCGCCGCaUgUCGACGaGCGCGg- -3'
miRNA:   3'- -CCUG------------UGUGGUG-GgAGCUGC-CGCGCag -5'
6751 5' -58.8 NC_001875.2 + 55074 0.67 0.758239
Target:  5'- uGGCGCugUAgCaCUCGGCcaGCGCGUCc -3'
miRNA:   3'- cCUGUGugGUgG-GAGCUGc-CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 46622 0.67 0.739324
Target:  5'- cGACaugcgGCGCUACCgCgCGGCGGCcCGUCg -3'
miRNA:   3'- cCUG-----UGUGGUGG-GaGCUGCCGcGCAG- -5'
6751 5' -58.8 NC_001875.2 + 81834 0.67 0.729727
Target:  5'- cGACACGCgCGCCCcaaccgCGACaagcGCcGCGUCa -3'
miRNA:   3'- cCUGUGUG-GUGGGa-----GCUGc---CG-CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 100283 0.67 0.714208
Target:  5'- -uGCACGCgACCUUCGcgcaaacaauacacaAUGaGCGCGUCg -3'
miRNA:   3'- ccUGUGUGgUGGGAGC---------------UGC-CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 88983 0.67 0.7103
Target:  5'- cGGAC-CugCGCCU---GCGGCGCGcCg -3'
miRNA:   3'- -CCUGuGugGUGGGagcUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 21665 0.67 0.7103
Target:  5'- cGGACgagcgcagugcgACGCCGCCC--GACGaGCGCGa- -3'
miRNA:   3'- -CCUG------------UGUGGUGGGagCUGC-CGCGCag -5'
6751 5' -58.8 NC_001875.2 + 15264 0.67 0.7103
Target:  5'- -uGCGCACCACC---GGCGGCGUGg- -3'
miRNA:   3'- ccUGUGUGGUGGgagCUGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 55854 0.67 0.709321
Target:  5'- cGGACACGCUugagcacGCCgaCUCGAcuaCGGCGCa-- -3'
miRNA:   3'- -CCUGUGUGG-------UGG--GAGCU---GCCGCGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.