miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 5' -58.8 NC_001875.2 + 21043 0.7 0.531631
Target:  5'- cGGGCACGCCuuCCUUGuCGGCGa-UCu -3'
miRNA:   3'- -CCUGUGUGGugGGAGCuGCCGCgcAG- -5'
6751 5' -58.8 NC_001875.2 + 21151 0.66 0.803505
Target:  5'- -aACGCGgCGCCCUCcGCGGcCGCuUCu -3'
miRNA:   3'- ccUGUGUgGUGGGAGcUGCC-GCGcAG- -5'
6751 5' -58.8 NC_001875.2 + 21665 0.67 0.7103
Target:  5'- cGGACgagcgcagugcgACGCCGCCC--GACGaGCGCGa- -3'
miRNA:   3'- -CCUG------------UGUGGUGGGagCUGC-CGCGCag -5'
6751 5' -58.8 NC_001875.2 + 22918 0.67 0.745989
Target:  5'- cGGGCAgCGCCGCUUuaaugUCGuccaccaacgcguuaGGCGCGUCa -3'
miRNA:   3'- -CCUGU-GUGGUGGG-----AGCug-------------CCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 24014 0.69 0.620684
Target:  5'- aGGCGCACCgggcGCgggCUCGGCGGuCGCGUg -3'
miRNA:   3'- cCUGUGUGG----UGg--GAGCUGCC-GCGCAg -5'
6751 5' -58.8 NC_001875.2 + 26229 0.68 0.700486
Target:  5'- -cACACgugcaACCGCUCUUGgcgcuGCGGCGUGUCc -3'
miRNA:   3'- ccUGUG-----UGGUGGGAGC-----UGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 26618 0.66 0.785788
Target:  5'- uGACAgGCCGCCCaagcaugaCGAgGGCGCc-- -3'
miRNA:   3'- cCUGUgUGGUGGGa-------GCUgCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 29070 0.67 0.72005
Target:  5'- cGGGCGugUugCugCC---ACGGCGCGUCg -3'
miRNA:   3'- -CCUGU--GugGugGGagcUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 29922 0.72 0.426448
Target:  5'- uGGACACguugacaagggGCCGCCCaggcagccgaaggCGACGGCGCuGUUu -3'
miRNA:   3'- -CCUGUG-----------UGGUGGGa------------GCUGCCGCG-CAG- -5'
6751 5' -58.8 NC_001875.2 + 32254 0.69 0.640737
Target:  5'- uGGcuGCGCGCCGCCUUUuauACGcGCGCGUa -3'
miRNA:   3'- -CC--UGUGUGGUGGGAGc--UGC-CGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 33636 0.69 0.600665
Target:  5'- cGGGCAguugcagccgcuCACCucgacGCCgUCGGCGGCGUGg- -3'
miRNA:   3'- -CCUGU------------GUGG-----UGGgAGCUGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 33799 0.7 0.570819
Target:  5'- aGGCGCACUugCCcgucggCGcACGGCGCG-Cg -3'
miRNA:   3'- cCUGUGUGGugGGa-----GC-UGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 36636 0.66 0.776727
Target:  5'- cGGCACACgaGCUUgaaGAUGGCcGCGUCg -3'
miRNA:   3'- cCUGUGUGg-UGGGag-CUGCCG-CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 36666 0.67 0.72005
Target:  5'- -uGCGCGCUGagCUCGG-GGCGCGUCa -3'
miRNA:   3'- ccUGUGUGGUggGAGCUgCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 37089 0.72 0.46567
Target:  5'- cGGACgACACCGCCg-CGugGGUGUG-Cg -3'
miRNA:   3'- -CCUG-UGUGGUGGgaGCugCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 37114 0.67 0.72005
Target:  5'- cGGGCGCGgCGCCg-CGcCGGCguuuGCGUCu -3'
miRNA:   3'- -CCUGUGUgGUGGgaGCuGCCG----CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 37397 0.68 0.650758
Target:  5'- --cCGCuGCCGCCgUUCGaACGGCGCGUg -3'
miRNA:   3'- ccuGUG-UGGUGG-GAGC-UGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 39307 0.67 0.739324
Target:  5'- -cGCGCugCACaCCgugcCGGCGGCGUG-Cg -3'
miRNA:   3'- ccUGUGugGUG-GGa---GCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 40099 0.7 0.577756
Target:  5'- uGACGCGCCACUggCUggcgcuguacuugcCGACGGC-CGUCa -3'
miRNA:   3'- cCUGUGUGGUGG--GA--------------GCUGCCGcGCAG- -5'
6751 5' -58.8 NC_001875.2 + 41389 0.74 0.333163
Target:  5'- -uACGCGCCGCCCacCGACGccucugcgcGCGCGUCu -3'
miRNA:   3'- ccUGUGUGGUGGGa-GCUGC---------CGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.