miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 5' -58.8 NC_001875.2 + 89905 0.71 0.502889
Target:  5'- cGugGCGCCGCgCauauaaagGGCGGCGCGUCc -3'
miRNA:   3'- cCugUGUGGUGgGag------CUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 125400 0.71 0.512398
Target:  5'- -cGCGCGCUACUa-CGACGGCGCG-Ca -3'
miRNA:   3'- ccUGUGUGGUGGgaGCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 21043 0.7 0.531631
Target:  5'- cGGGCACGCCuuCCUUGuCGGCGa-UCu -3'
miRNA:   3'- -CCUGUGUGGugGGAGCuGCCGCgcAG- -5'
6751 5' -58.8 NC_001875.2 + 114520 0.7 0.54232
Target:  5'- cGGCGCaACCGCCagcagcucuuuaacaUCGGCGGCGC-UCa -3'
miRNA:   3'- cCUGUG-UGGUGGg--------------AGCUGCCGCGcAG- -5'
6751 5' -58.8 NC_001875.2 + 91399 0.7 0.551119
Target:  5'- gGGGCuGC-CCACguUCUCGAUGGCGCG-Cg -3'
miRNA:   3'- -CCUG-UGuGGUG--GGAGCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 79463 0.7 0.551119
Target:  5'- uGGACGCACCugcacuugcGCUCUUGGacgcUGGCGCGg- -3'
miRNA:   3'- -CCUGUGUGG---------UGGGAGCU----GCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 77260 0.7 0.560945
Target:  5'- uGGGCGCGCCGCCgggCGaagcggccgccGCGGCGCa-- -3'
miRNA:   3'- -CCUGUGUGGUGGga-GC-----------UGCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 65753 0.7 0.567852
Target:  5'- cGGGCcucggcguauucguGCGCgGCgggCGGCGGCGCGUCg -3'
miRNA:   3'- -CCUG--------------UGUGgUGggaGCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 33799 0.7 0.570819
Target:  5'- aGGCGCACUugCCcgucggCGcACGGCGCG-Cg -3'
miRNA:   3'- cCUGUGUGGugGGa-----GC-UGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 58356 0.7 0.570819
Target:  5'- aGGu--CGCCAUgCUCGuCGGaCGCGUCg -3'
miRNA:   3'- -CCuguGUGGUGgGAGCuGCC-GCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 100605 0.7 0.570819
Target:  5'- cGGGCGCcgGCCGCggccgcuguuugCCUCGugGaugagcagcguGCGCGUCa -3'
miRNA:   3'- -CCUGUG--UGGUG------------GGAGCugC-----------CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 40099 0.7 0.577756
Target:  5'- uGACGCGCCACUggCUggcgcuguacuugcCGACGGC-CGUCa -3'
miRNA:   3'- cCUGUGUGGUGG--GA--------------GCUGCCGcGCAG- -5'
6751 5' -58.8 NC_001875.2 + 87387 0.7 0.580734
Target:  5'- uGGCGCACUGCgC-CGACGGCGCc-- -3'
miRNA:   3'- cCUGUGUGGUGgGaGCUGCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 112712 0.69 0.590685
Target:  5'- uGACgGCGCCGCCgUgGuaGGCGCGUCg -3'
miRNA:   3'- cCUG-UGUGGUGGgAgCugCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 77939 0.69 0.590685
Target:  5'- cGGCGCGCCcacaauuauuuGCgCCgCGGCGGCGCG-Ca -3'
miRNA:   3'- cCUGUGUGG-----------UG-GGaGCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 72357 0.69 0.590685
Target:  5'- cGACGCGCUugUCUCGGCcGCGCu-- -3'
miRNA:   3'- cCUGUGUGGugGGAGCUGcCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 16902 0.69 0.600665
Target:  5'- -uACGC-CCAUCgaCGACGGCGCGg- -3'
miRNA:   3'- ccUGUGuGGUGGgaGCUGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 114785 0.69 0.600665
Target:  5'- -aGCGCguGCUAUuuUUGGCGGUGCGUCa -3'
miRNA:   3'- ccUGUG--UGGUGggAGCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 55338 0.69 0.600665
Target:  5'- uGACGCGCCG-CUUCGGgGGCGCcgccucGUCg -3'
miRNA:   3'- cCUGUGUGGUgGGAGCUgCCGCG------CAG- -5'
6751 5' -58.8 NC_001875.2 + 33636 0.69 0.600665
Target:  5'- cGGGCAguugcagccgcuCACCucgacGCCgUCGGCGGCGUGg- -3'
miRNA:   3'- -CCUGU------------GUGG-----UGGgAGCUGCCGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.