Results 1 - 20 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6751 | 5' | -58.8 | NC_001875.2 | + | 105050 | 1.12 | 0.00098 |
Target: 5'- cGGACACACCACCCUCGACGGCGCGUCg -3' miRNA: 3'- -CCUGUGUGGUGGGAGCUGCCGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 120269 | 0.81 | 0.124125 |
Target: 5'- aGGcGCACACCGCUCcccgcuUCGGCGGCGCGUa -3' miRNA: 3'- -CC-UGUGUGGUGGG------AGCUGCCGCGCAg -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 50538 | 0.79 | 0.163786 |
Target: 5'- aGGAgGCGCCGCCggCGGCGcGCGUGUCu -3' miRNA: 3'- -CCUgUGUGGUGGgaGCUGC-CGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 41926 | 0.78 | 0.19945 |
Target: 5'- cGGACGCGCCGCCCUUuauaugcGCGGCGCc-- -3' miRNA: 3'- -CCUGUGUGGUGGGAGc------UGCCGCGcag -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 19126 | 0.77 | 0.219704 |
Target: 5'- cGACGCGCCuACCa-CGGCGGCGcCGUCa -3' miRNA: 3'- cCUGUGUGG-UGGgaGCUGCCGC-GCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 76499 | 0.75 | 0.291124 |
Target: 5'- cGAgGCGgCGCCCcCGaaGCGGCGCGUCa -3' miRNA: 3'- cCUgUGUgGUGGGaGC--UGCCGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 91865 | 0.75 | 0.325134 |
Target: 5'- cGGGCccccaggGCGCCugCUggugCGGCGGCGgGUCg -3' miRNA: 3'- -CCUG-------UGUGGugGGa---GCUGCCGCgCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 41389 | 0.74 | 0.333163 |
Target: 5'- -uACGCGCCGCCCacCGACGccucugcgcGCGCGUCu -3' miRNA: 3'- ccUGUGUGGUGGGa-GCUGC---------CGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 54002 | 0.74 | 0.333163 |
Target: 5'- uGGuCGCGCaCGgCCUUGGCGGCGCG-Cg -3' miRNA: 3'- -CCuGUGUG-GUgGGAGCUGCCGCGCaG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 44899 | 0.73 | 0.387616 |
Target: 5'- uGGACgcugGCGCuCGCCCUCGcacucuagGCGGCGCuUCa -3' miRNA: 3'- -CCUG----UGUG-GUGGGAGC--------UGCCGCGcAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 99281 | 0.73 | 0.403373 |
Target: 5'- cGGCACugcugcaGCCGCuCCUCGGCGGCGuUGUa -3' miRNA: 3'- cCUGUG-------UGGUG-GGAGCUGCCGC-GCAg -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 102553 | 0.73 | 0.404213 |
Target: 5'- cGACACGCCacacgaccgcGCCC-CGcCGGCGCGgUCg -3' miRNA: 3'- cCUGUGUGG----------UGGGaGCuGCCGCGC-AG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 81299 | 0.72 | 0.421252 |
Target: 5'- aGACACGCgCGCCgC-CGGCGGCGCcUCc -3' miRNA: 3'- cCUGUGUG-GUGG-GaGCUGCCGCGcAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 29922 | 0.72 | 0.426448 |
Target: 5'- uGGACACguugacaagggGCCGCCCaggcagccgaaggCGACGGCGCuGUUu -3' miRNA: 3'- -CCUGUG-----------UGGUGGGa------------GCUGCCGCG-CAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 113353 | 0.72 | 0.438717 |
Target: 5'- cGGGCGCGgCugCgUCGcuGCGGCGCGg- -3' miRNA: 3'- -CCUGUGUgGugGgAGC--UGCCGCGCag -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 54884 | 0.72 | 0.447603 |
Target: 5'- -cGCGCACUGggCUCGcACGGCGCGUCu -3' miRNA: 3'- ccUGUGUGGUggGAGC-UGCCGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 122106 | 0.72 | 0.456589 |
Target: 5'- uGGACGCucaacacguGCCACgCUUCGggcGCGGCGCGg- -3' miRNA: 3'- -CCUGUG---------UGGUG-GGAGC---UGCCGCGCag -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 37089 | 0.72 | 0.46567 |
Target: 5'- cGGACgACACCGCCg-CGugGGUGUG-Cg -3' miRNA: 3'- -CCUG-UGUGGUGGgaGCugCCGCGCaG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 11938 | 0.71 | 0.474844 |
Target: 5'- cGGCGCGCCgACUgUgcgcgcgacCGGCGGCGCGUUg -3' miRNA: 3'- cCUGUGUGG-UGGgA---------GCUGCCGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 69233 | 0.71 | 0.493457 |
Target: 5'- cGGACACGgCGgCgUCGaACGGCGCGc- -3' miRNA: 3'- -CCUGUGUgGUgGgAGC-UGCCGCGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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