miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 5' -58.8 NC_001875.2 + 11095 0.69 0.610667
Target:  5'- uGGACACgGCCGCCgUCu-CGGCGCc-- -3'
miRNA:   3'- -CCUGUG-UGGUGGgAGcuGCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 79463 0.7 0.551119
Target:  5'- uGGACGCACCugcacuugcGCUCUUGGacgcUGGCGCGg- -3'
miRNA:   3'- -CCUGUGUGG---------UGGGAGCU----GCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 65753 0.7 0.567852
Target:  5'- cGGGCcucggcguauucguGCGCgGCgggCGGCGGCGCGUCg -3'
miRNA:   3'- -CCUG--------------UGUGgUGggaGCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 100605 0.7 0.570819
Target:  5'- cGGGCGCcgGCCGCggccgcuguuugCCUCGugGaugagcagcguGCGCGUCa -3'
miRNA:   3'- -CCUGUG--UGGUG------------GGAGCugC-----------CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 40099 0.7 0.577756
Target:  5'- uGACGCGCCACUggCUggcgcuguacuugcCGACGGC-CGUCa -3'
miRNA:   3'- cCUGUGUGGUGG--GA--------------GCUGCCGcGCAG- -5'
6751 5' -58.8 NC_001875.2 + 72357 0.69 0.590685
Target:  5'- cGACGCGCUugUCUCGGCcGCGCu-- -3'
miRNA:   3'- cCUGUGUGGugGGAGCUGcCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 16902 0.69 0.600665
Target:  5'- -uACGC-CCAUCgaCGACGGCGCGg- -3'
miRNA:   3'- ccUGUGuGGUGGgaGCUGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 114785 0.69 0.600665
Target:  5'- -aGCGCguGCUAUuuUUGGCGGUGCGUCa -3'
miRNA:   3'- ccUGUG--UGGUGggAGCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 55338 0.69 0.600665
Target:  5'- uGACGCGCCG-CUUCGGgGGCGCcgccucGUCg -3'
miRNA:   3'- cCUGUGUGGUgGGAGCUgCCGCG------CAG- -5'
6751 5' -58.8 NC_001875.2 + 21043 0.7 0.531631
Target:  5'- cGGGCACGCCuuCCUUGuCGGCGa-UCu -3'
miRNA:   3'- -CCUGUGUGGugGGAGCuGCCGCgcAG- -5'
6751 5' -58.8 NC_001875.2 + 11938 0.71 0.474844
Target:  5'- cGGCGCGCCgACUgUgcgcgcgacCGGCGGCGCGUUg -3'
miRNA:   3'- cCUGUGUGG-UGGgA---------GCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 37089 0.72 0.46567
Target:  5'- cGGACgACACCGCCg-CGugGGUGUG-Cg -3'
miRNA:   3'- -CCUG-UGUGGUGGgaGCugCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 19126 0.77 0.219704
Target:  5'- cGACGCGCCuACCa-CGGCGGCGcCGUCa -3'
miRNA:   3'- cCUGUGUGG-UGGgaGCUGCCGC-GCAG- -5'
6751 5' -58.8 NC_001875.2 + 54002 0.74 0.333163
Target:  5'- uGGuCGCGCaCGgCCUUGGCGGCGCG-Cg -3'
miRNA:   3'- -CCuGUGUG-GUgGGAGCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 44899 0.73 0.387616
Target:  5'- uGGACgcugGCGCuCGCCCUCGcacucuagGCGGCGCuUCa -3'
miRNA:   3'- -CCUG----UGUG-GUGGGAGC--------UGCCGCGcAG- -5'
6751 5' -58.8 NC_001875.2 + 99281 0.73 0.403373
Target:  5'- cGGCACugcugcaGCCGCuCCUCGGCGGCGuUGUa -3'
miRNA:   3'- cCUGUG-------UGGUG-GGAGCUGCCGC-GCAg -5'
6751 5' -58.8 NC_001875.2 + 81299 0.72 0.421252
Target:  5'- aGACACGCgCGCCgC-CGGCGGCGCcUCc -3'
miRNA:   3'- cCUGUGUG-GUGG-GaGCUGCCGCGcAG- -5'
6751 5' -58.8 NC_001875.2 + 29922 0.72 0.426448
Target:  5'- uGGACACguugacaagggGCCGCCCaggcagccgaaggCGACGGCGCuGUUu -3'
miRNA:   3'- -CCUGUG-----------UGGUGGGa------------GCUGCCGCG-CAG- -5'
6751 5' -58.8 NC_001875.2 + 54884 0.72 0.447603
Target:  5'- -cGCGCACUGggCUCGcACGGCGCGUCu -3'
miRNA:   3'- ccUGUGUGGUggGAGC-UGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 122106 0.72 0.456589
Target:  5'- uGGACGCucaacacguGCCACgCUUCGggcGCGGCGCGg- -3'
miRNA:   3'- -CCUGUG---------UGGUG-GGAGC---UGCCGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.