miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 5' -58.8 NC_001875.2 + 105050 1.12 0.00098
Target:  5'- cGGACACACCACCCUCGACGGCGCGUCg -3'
miRNA:   3'- -CCUGUGUGGUGGGAGCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 112712 0.69 0.590685
Target:  5'- uGACgGCGCCGCCgUgGuaGGCGCGUCg -3'
miRNA:   3'- cCUG-UGUGGUGGgAgCugCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 33636 0.69 0.600665
Target:  5'- cGGGCAguugcagccgcuCACCucgacGCCgUCGGCGGCGUGg- -3'
miRNA:   3'- -CCUGU------------GUGG-----UGGgAGCUGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 6520 0.66 0.806979
Target:  5'- ---aACGCCGCCCaacaugaGuuucuuuaccaacuuGCGGCGCGUCa -3'
miRNA:   3'- ccugUGUGGUGGGag-----C---------------UGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 91865 0.75 0.325134
Target:  5'- cGGGCccccaggGCGCCugCUggugCGGCGGCGgGUCg -3'
miRNA:   3'- -CCUG-------UGUGGugGGa---GCUGCCGCgCAG- -5'
6751 5' -58.8 NC_001875.2 + 41389 0.74 0.333163
Target:  5'- -uACGCGCCGCCCacCGACGccucugcgcGCGCGUCu -3'
miRNA:   3'- ccUGUGUGGUGGGa-GCUGC---------CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 113353 0.72 0.438717
Target:  5'- cGGGCGCGgCugCgUCGcuGCGGCGCGg- -3'
miRNA:   3'- -CCUGUGUgGugGgAGC--UGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 69233 0.71 0.493457
Target:  5'- cGGACACGgCGgCgUCGaACGGCGCGc- -3'
miRNA:   3'- -CCUGUGUgGUgGgAGC-UGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 114520 0.7 0.54232
Target:  5'- cGGCGCaACCGCCagcagcucuuuaacaUCGGCGGCGC-UCa -3'
miRNA:   3'- cCUGUG-UGGUGGg--------------AGCUGCCGCGcAG- -5'
6751 5' -58.8 NC_001875.2 + 87387 0.7 0.580734
Target:  5'- uGGCGCACUGCgC-CGACGGCGCc-- -3'
miRNA:   3'- cCUGUGUGGUGgGaGCUGCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 77260 0.7 0.560945
Target:  5'- uGGGCGCGCCGCCgggCGaagcggccgccGCGGCGCa-- -3'
miRNA:   3'- -CCUGUGUGGUGGga-GC-----------UGCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 125400 0.71 0.512398
Target:  5'- -cGCGCGCUACUa-CGACGGCGCG-Ca -3'
miRNA:   3'- ccUGUGUGGUGGgaGCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 120269 0.81 0.124125
Target:  5'- aGGcGCACACCGCUCcccgcuUCGGCGGCGCGUa -3'
miRNA:   3'- -CC-UGUGUGGUGGG------AGCUGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 33799 0.7 0.570819
Target:  5'- aGGCGCACUugCCcgucggCGcACGGCGCG-Cg -3'
miRNA:   3'- cCUGUGUGGugGGa-----GC-UGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 50538 0.79 0.163786
Target:  5'- aGGAgGCGCCGCCggCGGCGcGCGUGUCu -3'
miRNA:   3'- -CCUgUGUGGUGGgaGCUGC-CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 89905 0.71 0.502889
Target:  5'- cGugGCGCCGCgCauauaaagGGCGGCGCGUCc -3'
miRNA:   3'- cCugUGUGGUGgGag------CUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 58356 0.7 0.570819
Target:  5'- aGGu--CGCCAUgCUCGuCGGaCGCGUCg -3'
miRNA:   3'- -CCuguGUGGUGgGAGCuGCC-GCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 77939 0.69 0.590685
Target:  5'- cGGCGCGCCcacaauuauuuGCgCCgCGGCGGCGCG-Ca -3'
miRNA:   3'- cCUGUGUGG-----------UG-GGaGCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 76499 0.75 0.291124
Target:  5'- cGAgGCGgCGCCCcCGaaGCGGCGCGUCa -3'
miRNA:   3'- cCUgUGUgGUGGGaGC--UGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 102553 0.73 0.404213
Target:  5'- cGACACGCCacacgaccgcGCCC-CGcCGGCGCGgUCg -3'
miRNA:   3'- cCUGUGUGG----------UGGGaGCuGCCGCGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.