Results 1 - 20 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6751 | 5' | -58.8 | NC_001875.2 | + | 100684 | 0.66 | 0.794717 |
Target: 5'- -aGCACACUGUCCgacuccgCGcGCGGCGCGUUa -3' miRNA: 3'- ccUGUGUGGUGGGa------GC-UGCCGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 99002 | 0.66 | 0.776727 |
Target: 5'- cGGCACcagguuuugguGCCACgCUCGcaaGCGGCGcCGUUc -3' miRNA: 3'- cCUGUG-----------UGGUGgGAGC---UGCCGC-GCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 2649 | 0.66 | 0.776727 |
Target: 5'- cGGACACGuCUACUUgcggcgcCGGCGGCGCc-- -3' miRNA: 3'- -CCUGUGU-GGUGGGa------GCUGCCGCGcag -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 10440 | 0.66 | 0.785788 |
Target: 5'- uGGCGCAgCAgCUUUGacGCGGCGCGg- -3' miRNA: 3'- cCUGUGUgGUgGGAGC--UGCCGCGCag -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 109003 | 0.66 | 0.767541 |
Target: 5'- uGGACGCguacgucguGCCGCC---GACGGUGcCGUCg -3' miRNA: 3'- -CCUGUG---------UGGUGGgagCUGCCGC-GCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 3815 | 0.66 | 0.776727 |
Target: 5'- cGAC-CACCgGCCgUCGuCGGCGCa-- -3' miRNA: 3'- cCUGuGUGG-UGGgAGCuGCCGCGcag -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 44299 | 0.66 | 0.803505 |
Target: 5'- -uGCACACCauGCCCUCG-UGGUG-GUUg -3' miRNA: 3'- ccUGUGUGG--UGGGAGCuGCCGCgCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 95355 | 0.66 | 0.803505 |
Target: 5'- cGGCGCACgugCACgCgUCGGCGGaaaacgGCGUCg -3' miRNA: 3'- cCUGUGUG---GUG-GgAGCUGCCg-----CGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 128805 | 0.66 | 0.785788 |
Target: 5'- -uACGCGCUGCCCa--ACGGCGUGUa -3' miRNA: 3'- ccUGUGUGGUGGGagcUGCCGCGCAg -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 6520 | 0.66 | 0.806979 |
Target: 5'- ---aACGCCGCCCaacaugaGuuucuuuaccaacuuGCGGCGCGUCa -3' miRNA: 3'- ccugUGUGGUGGGag-----C---------------UGCCGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 111541 | 0.66 | 0.794717 |
Target: 5'- uGGACcaGCACCACCaguUCccCGGCGUGg- -3' miRNA: 3'- -CCUG--UGUGGUGGg--AGcuGCCGCGCag -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 78343 | 0.66 | 0.776727 |
Target: 5'- -cGCGCACCGagUCCUUGA--GCGCGUCc -3' miRNA: 3'- ccUGUGUGGU--GGGAGCUgcCGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 3540 | 0.66 | 0.767541 |
Target: 5'- uGGCGCACguCACCggCGccgUGGCGCGUCu -3' miRNA: 3'- cCUGUGUG--GUGGgaGCu--GCCGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 62488 | 0.66 | 0.803505 |
Target: 5'- cGGGCGCA-CGCCgCU-GACuGCGCGUUu -3' miRNA: 3'- -CCUGUGUgGUGG-GAgCUGcCGCGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 93340 | 0.66 | 0.767541 |
Target: 5'- cGACaccaGCACCACCUugUCGuCGGgaGUGUCg -3' miRNA: 3'- cCUG----UGUGGUGGG--AGCuGCCg-CGCAG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 5930 | 0.66 | 0.803505 |
Target: 5'- uGGguaGCGCCGCgCagGugGGCGCGg- -3' miRNA: 3'- -CCug-UGUGGUGgGagCugCCGCGCag -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 74630 | 0.66 | 0.776727 |
Target: 5'- cGGcuGCACugCGCUgUCGGCaGCGUGcCa -3' miRNA: 3'- -CC--UGUGugGUGGgAGCUGcCGCGCaG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 91426 | 0.66 | 0.783986 |
Target: 5'- uGGGC-CGCaGCUCgcuguagcugagCGGCGGCGCGUg -3' miRNA: 3'- -CCUGuGUGgUGGGa-----------GCUGCCGCGCAg -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 83573 | 0.66 | 0.776727 |
Target: 5'- cGGACACAUgAggugUCC-CGGCGGgGCGcCg -3' miRNA: 3'- -CCUGUGUGgU----GGGaGCUGCCgCGCaG- -5' |
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6751 | 5' | -58.8 | NC_001875.2 | + | 42559 | 0.66 | 0.784888 |
Target: 5'- uGGuCGCGCCcagccgcGCCaggUCGGCGcacgcGCGCGUCa -3' miRNA: 3'- -CCuGUGUGG-------UGGg--AGCUGC-----CGCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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