miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 5' -58.8 NC_001875.2 + 1362 0.69 0.620684
Target:  5'- cGGGUGCgaaCGCUCUCGaACGGCGCGUg -3'
miRNA:   3'- -CCUGUGug-GUGGGAGC-UGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 1478 0.69 0.610667
Target:  5'- aGGCGCguGCUACUUUUaGCGGUGCGUCa -3'
miRNA:   3'- cCUGUG--UGGUGGGAGcUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 1524 0.68 0.690617
Target:  5'- uGGGUGCgGgCGCUCUCGaACGGCGCGUg -3'
miRNA:   3'- -CCUGUG-UgGUGGGAGC-UGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 1590 0.69 0.620684
Target:  5'- cGGGUGCgaaCGCUCUCGaACGGCGCGUg -3'
miRNA:   3'- -CCUGUGug-GUGGGAGC-UGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 1656 0.69 0.620684
Target:  5'- cGGGUGCgaaCGCUCUCGaACGGCGCGUg -3'
miRNA:   3'- -CCUGUGug-GUGGGAGC-UGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 1722 0.66 0.803505
Target:  5'- cGGGUGCgaaCGCUCUCGaACGGCGUGUg -3'
miRNA:   3'- -CCUGUGug-GUGGGAGC-UGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 1782 0.69 0.620684
Target:  5'- cGGGUGCgaaCGCUCUCGaACGGCGCGUg -3'
miRNA:   3'- -CCUGUGug-GUGGGAGC-UGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 2649 0.66 0.776727
Target:  5'- cGGACACGuCUACUUgcggcgcCGGCGGCGCc-- -3'
miRNA:   3'- -CCUGUGU-GGUGGGa------GCUGCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 3540 0.66 0.767541
Target:  5'- uGGCGCACguCACCggCGccgUGGCGCGUCu -3'
miRNA:   3'- cCUGUGUG--GUGGgaGCu--GCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 3815 0.66 0.776727
Target:  5'- cGAC-CACCgGCCgUCGuCGGCGCa-- -3'
miRNA:   3'- cCUGuGUGG-UGGgAGCuGCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 5530 0.66 0.794717
Target:  5'- -uACGCcgGCCGCCgUUGAgGcGCGCGUUa -3'
miRNA:   3'- ccUGUG--UGGUGGgAGCUgC-CGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 5930 0.66 0.803505
Target:  5'- uGGguaGCGCCGCgCagGugGGCGCGg- -3'
miRNA:   3'- -CCug-UGUGGUGgGagCugCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 6520 0.66 0.806979
Target:  5'- ---aACGCCGCCCaacaugaGuuucuuuaccaacuuGCGGCGCGUCa -3'
miRNA:   3'- ccugUGUGGUGGGag-----C---------------UGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 6991 0.67 0.729727
Target:  5'- cGGGCAUcUUugCUUCGACguGGCGCGcCa -3'
miRNA:   3'- -CCUGUGuGGugGGAGCUG--CCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 10440 0.66 0.785788
Target:  5'- uGGCGCAgCAgCUUUGacGCGGCGCGg- -3'
miRNA:   3'- cCUGUGUgGUgGGAGC--UGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 11095 0.69 0.610667
Target:  5'- uGGACACgGCCGCCgUCu-CGGCGCc-- -3'
miRNA:   3'- -CCUGUG-UGGUGGgAGcuGCCGCGcag -5'
6751 5' -58.8 NC_001875.2 + 11938 0.71 0.474844
Target:  5'- cGGCGCGCCgACUgUgcgcgcgacCGGCGGCGCGUUg -3'
miRNA:   3'- cCUGUGUGG-UGGgA---------GCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 15264 0.67 0.7103
Target:  5'- -uGCGCACCACC---GGCGGCGUGg- -3'
miRNA:   3'- ccUGUGUGGUGGgagCUGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 16902 0.69 0.600665
Target:  5'- -uACGC-CCAUCgaCGACGGCGCGg- -3'
miRNA:   3'- ccUGUGuGGUGGgaGCUGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 19126 0.77 0.219704
Target:  5'- cGACGCGCCuACCa-CGGCGGCGcCGUCa -3'
miRNA:   3'- cCUGUGUGG-UGGgaGCUGCCGC-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.