miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 5' -58.8 NC_001875.2 + 128805 0.66 0.785788
Target:  5'- -uACGCGCUGCCCa--ACGGCGUGUa -3'
miRNA:   3'- ccUGUGUGGUGGGagcUGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 128719 0.68 0.690617
Target:  5'- cGGGCuuCGCCGCCCaggucugcgcgCGAgccgcgcccCGGCGCGUg -3'
miRNA:   3'- -CCUGu-GUGGUGGGa----------GCU---------GCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 128463 0.68 0.660764
Target:  5'- aGGACGCGCCuCCauaUCaGCcGCGCGUUa -3'
miRNA:   3'- -CCUGUGUGGuGGg--AGcUGcCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 126011 0.68 0.690617
Target:  5'- cGGGCGCGuCCAga-UCGGCGGCGCuggcaGUCu -3'
miRNA:   3'- -CCUGUGU-GGUgggAGCUGCCGCG-----CAG- -5'
6751 5' -58.8 NC_001875.2 + 125636 0.66 0.803505
Target:  5'- cGGACGCAauugCGCgCUUUGAaaCGGCGCG-Cg -3'
miRNA:   3'- -CCUGUGUg---GUG-GGAGCU--GCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 125400 0.71 0.512398
Target:  5'- -cGCGCGCUACUa-CGACGGCGCG-Ca -3'
miRNA:   3'- ccUGUGUGGUGGgaGCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 124389 0.68 0.700486
Target:  5'- cGGCcguACACCGCCgcaaUCGcCGGCGCG-Ca -3'
miRNA:   3'- cCUG---UGUGGUGGg---AGCuGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 122106 0.72 0.456589
Target:  5'- uGGACGCucaacacguGCCACgCUUCGggcGCGGCGCGg- -3'
miRNA:   3'- -CCUGUG---------UGGUG-GGAGC---UGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 120969 0.69 0.63071
Target:  5'- cGGCAgCGCCACCgaCG-CGGCcaccGCGUCg -3'
miRNA:   3'- cCUGU-GUGGUGGgaGCuGCCG----CGCAG- -5'
6751 5' -58.8 NC_001875.2 + 120269 0.81 0.124125
Target:  5'- aGGcGCACACCGCUCcccgcuUCGGCGGCGCGUa -3'
miRNA:   3'- -CC-UGUGUGGUGGG------AGCUGCCGCGCAg -5'
6751 5' -58.8 NC_001875.2 + 119531 0.69 0.63071
Target:  5'- cGGGCGCguugACCACgCacaCGGCGGCGUGcCg -3'
miRNA:   3'- -CCUGUG----UGGUGgGa--GCUGCCGCGCaG- -5'
6751 5' -58.8 NC_001875.2 + 114785 0.69 0.600665
Target:  5'- -aGCGCguGCUAUuuUUGGCGGUGCGUCa -3'
miRNA:   3'- ccUGUG--UGGUGggAGCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 114720 0.68 0.660764
Target:  5'- cGGCGugUGCUAUuuUUGGCGGUGCGUCa -3'
miRNA:   3'- cCUGU--GUGGUGggAGCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 114654 0.68 0.660764
Target:  5'- cGGCGugUGCUAUuuUUGGCGGUGCGUCa -3'
miRNA:   3'- cCUGU--GUGGUGggAGCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 114520 0.7 0.54232
Target:  5'- cGGCGCaACCGCCagcagcucuuuaacaUCGGCGGCGC-UCa -3'
miRNA:   3'- cCUGUG-UGGUGGg--------------AGCUGCCGCGcAG- -5'
6751 5' -58.8 NC_001875.2 + 113872 0.68 0.670748
Target:  5'- cGGGCACGucguccaCGCCCaUGAUGGUGUGUUc -3'
miRNA:   3'- -CCUGUGUg------GUGGGaGCUGCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 113353 0.72 0.438717
Target:  5'- cGGGCGCGgCugCgUCGcuGCGGCGCGg- -3'
miRNA:   3'- -CCUGUGUgGugGgAGC--UGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 112712 0.69 0.590685
Target:  5'- uGACgGCGCCGCCgUgGuaGGCGCGUCg -3'
miRNA:   3'- cCUG-UGUGGUGGgAgCugCCGCGCAG- -5'
6751 5' -58.8 NC_001875.2 + 111541 0.66 0.794717
Target:  5'- uGGACcaGCACCACCaguUCccCGGCGUGg- -3'
miRNA:   3'- -CCUG--UGUGGUGGg--AGcuGCCGCGCag -5'
6751 5' -58.8 NC_001875.2 + 110012 0.68 0.680701
Target:  5'- uGACGCGCgCGCagCUCGACcaguGGCGCGa- -3'
miRNA:   3'- cCUGUGUG-GUGg-GAGCUG----CCGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.