miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 3' -56.5 NC_001875.2 + 30214 0.67 0.824739
Target:  5'- aCGGCcguuguGGCGACcACUUUGuACGUGGUCGc -3'
miRNA:   3'- -GCCG------CCGUUGuUGGAGU-UGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 99396 0.67 0.824739
Target:  5'- cCGGCGGCGcCAGCgggucgcgCAGCGcauuguUGGCCa -3'
miRNA:   3'- -GCCGCCGUuGUUGga------GUUGC------ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 47342 0.67 0.824739
Target:  5'- uCGGCGGCGGCcaauGACCUaauuGCGUGuGUg- -3'
miRNA:   3'- -GCCGCCGUUG----UUGGAgu--UGCAC-CGgc -5'
6752 3' -56.5 NC_001875.2 + 88380 0.67 0.824739
Target:  5'- gGGCGugcucaaccgcaGCGAgGACCUCAcCGaguggaUGGCCGa -3'
miRNA:   3'- gCCGC------------CGUUgUUGGAGUuGC------ACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 97909 0.67 0.824739
Target:  5'- -cGCGGCGcaagcuggGCcACCUCAACGUGucGCUGc -3'
miRNA:   3'- gcCGCCGU--------UGuUGGAGUUGCAC--CGGC- -5'
6752 3' -56.5 NC_001875.2 + 65523 0.67 0.824739
Target:  5'- aCGGCGGCcGCccacGCCaUCAACucgccGGCCGc -3'
miRNA:   3'- -GCCGCCGuUGu---UGG-AGUUGca---CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 77629 0.67 0.824739
Target:  5'- uCGGCGGCAACGGCUcgggUCug-GU-GCCGa -3'
miRNA:   3'- -GCCGCCGUUGUUGG----AGuugCAcCGGC- -5'
6752 3' -56.5 NC_001875.2 + 73706 0.67 0.816145
Target:  5'- gCGGCGGCuGCGGCUguugggguuggUCGggAgGUGGCUGc -3'
miRNA:   3'- -GCCGCCGuUGUUGG-----------AGU--UgCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 64950 0.67 0.816145
Target:  5'- gGGCuGCAgaaagaGCugcGCCaaaaCAGCGUGGCCGa -3'
miRNA:   3'- gCCGcCGU------UGu--UGGa---GUUGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 42990 0.67 0.816145
Target:  5'- aGGCGGCGGCcguugcgaagguGGCCUCcauuGCGaGuGCCGc -3'
miRNA:   3'- gCCGCCGUUG------------UUGGAGu---UGCaC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 50880 0.67 0.816145
Target:  5'- gGGCGGCGcggccACGaaAUCUUGACG-GGCCc -3'
miRNA:   3'- gCCGCCGU-----UGU--UGGAGUUGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 53557 0.67 0.816145
Target:  5'- uGGCGGCcauCAACUUUu-CGuUGGCCa -3'
miRNA:   3'- gCCGCCGuu-GUUGGAGuuGC-ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 69279 0.67 0.807384
Target:  5'- uGGCGGCGGCAaguccACCcgcaCAACGUuuGCCa -3'
miRNA:   3'- gCCGCCGUUGU-----UGGa---GUUGCAc-CGGc -5'
6752 3' -56.5 NC_001875.2 + 46298 0.67 0.807384
Target:  5'- aGGCGcccgucuaGCAugAACCgCGugcugaucACGUGGCCGc -3'
miRNA:   3'- gCCGC--------CGUugUUGGaGU--------UGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 25996 0.67 0.803834
Target:  5'- aCGGCGGCucgcuggaccccAACAGCCgcgucgaggaaacCAugaagacgcuugACGUGGCCa -3'
miRNA:   3'- -GCCGCCG------------UUGUUGGa------------GU------------UGCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 93212 0.67 0.80205
Target:  5'- uCGGCGGCGuuaaacugguuuuccACAGcggugcgcuCCUCGACGcgcagcUGGCCc -3'
miRNA:   3'- -GCCGCCGU---------------UGUU---------GGAGUUGC------ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 97424 0.67 0.798463
Target:  5'- gCGGCGGCGACcgcguacguaAACCUCAuugAUGUGcaCCa -3'
miRNA:   3'- -GCCGCCGUUG----------UUGGAGU---UGCACc-GGc -5'
6752 3' -56.5 NC_001875.2 + 115823 0.67 0.798463
Target:  5'- uGGUGGCGACGuugACCUC-GCGgcccagcaGCCGg -3'
miRNA:   3'- gCCGCCGUUGU---UGGAGuUGCac------CGGC- -5'
6752 3' -56.5 NC_001875.2 + 61619 0.68 0.789392
Target:  5'- uGGCuuGGCGAgAACUgaucgcUAACGUGGCCc -3'
miRNA:   3'- gCCG--CCGUUgUUGGa-----GUUGCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 10143 0.68 0.789392
Target:  5'- gGGCGuGUuccGCAAgCgcggCGugGUGGCCGa -3'
miRNA:   3'- gCCGC-CGu--UGUUgGa---GUugCACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.