miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 3' -56.5 NC_001875.2 + 80909 0.66 0.857279
Target:  5'- gCGaGCGGCGccugaaaaaccACAGCCUCGgcauagacuacgACG-GGCCc -3'
miRNA:   3'- -GC-CGCCGU-----------UGUUGGAGU------------UGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 98755 0.66 0.856504
Target:  5'- aGaCGGCAAguGCC-CGacgugccggcaagACGUGGCCGa -3'
miRNA:   3'- gCcGCCGUUguUGGaGU-------------UGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 72399 0.66 0.851809
Target:  5'- uGGCGGCAACAAgCUgaccauuuuuuucggCAACGgcgcgccUGGCUu -3'
miRNA:   3'- gCCGCCGUUGUUgGA---------------GUUGC-------ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 31035 0.66 0.849434
Target:  5'- -aGCGGC--CGACC-CGGCGcGGCCGu -3'
miRNA:   3'- gcCGCCGuuGUUGGaGUUGCaCCGGC- -5'
6752 3' -56.5 NC_001875.2 + 117096 0.66 0.849434
Target:  5'- uGGUGGCAaaccgcagaaGCGACUUCA---UGGCCu -3'
miRNA:   3'- gCCGCCGU----------UGUUGGAGUugcACCGGc -5'
6752 3' -56.5 NC_001875.2 + 116194 0.66 0.849434
Target:  5'- uGGCGuGCGucuGCAccGCCUCAGgGUGGaaGu -3'
miRNA:   3'- gCCGC-CGU---UGU--UGGAGUUgCACCggC- -5'
6752 3' -56.5 NC_001875.2 + 127276 0.66 0.849434
Target:  5'- aGcGCGGCAACAuuGCUUgcCGACGUGcGCUc -3'
miRNA:   3'- gC-CGCCGUUGU--UGGA--GUUGCAC-CGGc -5'
6752 3' -56.5 NC_001875.2 + 84410 0.66 0.849434
Target:  5'- uCGGCGGCGGCGcguauagguGCCaUCGGCGgaucgGGagCGg -3'
miRNA:   3'- -GCCGCCGUUGU---------UGG-AGUUGCa----CCg-GC- -5'
6752 3' -56.5 NC_001875.2 + 120815 0.66 0.849434
Target:  5'- aCGGC-GCAGCAGCaaCGACGagGGCUa -3'
miRNA:   3'- -GCCGcCGUUGUUGgaGUUGCa-CCGGc -5'
6752 3' -56.5 NC_001875.2 + 12968 0.66 0.849434
Target:  5'- gCGGCgGGCGugGGCUccgcgcCGugGUGGCUa -3'
miRNA:   3'- -GCCG-CCGUugUUGGa-----GUugCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 75497 0.66 0.849434
Target:  5'- uGGCgucGGCGAUGGCgUCGGCGaUGGCg- -3'
miRNA:   3'- gCCG---CCGUUGUUGgAGUUGC-ACCGgc -5'
6752 3' -56.5 NC_001875.2 + 73661 0.67 0.84139
Target:  5'- gCGGCGGCuGCGGCUgcugCuGCGgcGGCUGc -3'
miRNA:   3'- -GCCGCCGuUGUUGGa---GuUGCa-CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 50017 0.67 0.84139
Target:  5'- gGGCGcGCGugGucGCCgggCGGCGaggcGGCCGg -3'
miRNA:   3'- gCCGC-CGUugU--UGGa--GUUGCa---CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 33872 0.67 0.84139
Target:  5'- gCGGcCGGCAgaACGGCgUUucgGUGGCCGc -3'
miRNA:   3'- -GCC-GCCGU--UGUUGgAGuugCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 82525 0.67 0.833156
Target:  5'- gGGCGGCccguGCAACUgCAG-GUGGCUc -3'
miRNA:   3'- gCCGCCGu---UGUUGGaGUUgCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 66119 0.67 0.833156
Target:  5'- gGGCGGCGagGCGgcGCCgcccgCGGaacaGUGGUCGg -3'
miRNA:   3'- gCCGCCGU--UGU--UGGa----GUUg---CACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 94456 0.67 0.833156
Target:  5'- aCGGCGGCAGCGGaaaCUgCAGCG-GcGCgCGc -3'
miRNA:   3'- -GCCGCCGUUGUUg--GA-GUUGCaC-CG-GC- -5'
6752 3' -56.5 NC_001875.2 + 32395 0.67 0.833156
Target:  5'- gGGCGGCGACGcaaaaguuguggGCgaCGGCGcaaagucucUGGCCa -3'
miRNA:   3'- gCCGCCGUUGU------------UGgaGUUGC---------ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 115439 0.67 0.828127
Target:  5'- uGGCGGCGACGaacaccgcACCUaccGCGUugagcuagcgggcgcGGCCa -3'
miRNA:   3'- gCCGCCGUUGU--------UGGAgu-UGCA---------------CCGGc -5'
6752 3' -56.5 NC_001875.2 + 88380 0.67 0.824739
Target:  5'- gGGCGugcucaaccgcaGCGAgGACCUCAcCGaguggaUGGCCGa -3'
miRNA:   3'- gCCGC------------CGUUgUUGGAGUuGC------ACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.