miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 3' -56.5 NC_001875.2 + 113624 0.72 0.569892
Target:  5'- gCGGCGGCAAgAGCggCGACG-GcGCCGc -3'
miRNA:   3'- -GCCGCCGUUgUUGgaGUUGCaC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 48019 0.72 0.569892
Target:  5'- -cGUGGUGGCGGCC-C-ACGUGGCCGc -3'
miRNA:   3'- gcCGCCGUUGUUGGaGuUGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 73791 0.72 0.569892
Target:  5'- uGGCGGCGGCGGCUggaacggCAGCGc-GCCGc -3'
miRNA:   3'- gCCGCCGUUGUUGGa------GUUGCacCGGC- -5'
6752 3' -56.5 NC_001875.2 + 125469 0.71 0.5902
Target:  5'- cCGcGCGGUgcccGACGACgaCAuCGUGGCCGa -3'
miRNA:   3'- -GC-CGCCG----UUGUUGgaGUuGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 19953 0.71 0.599382
Target:  5'- cCGGC-GCGACGguccggccggcGCCUCGccguugcugacguGCGUGGCCa -3'
miRNA:   3'- -GCCGcCGUUGU-----------UGGAGU-------------UGCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 89181 0.71 0.600403
Target:  5'- uGGC-GCAAauCAGCCUCGACGcGGaCCGg -3'
miRNA:   3'- gCCGcCGUU--GUUGGAGUUGCaCC-GGC- -5'
6752 3' -56.5 NC_001875.2 + 86099 0.71 0.600403
Target:  5'- uCGGCGccGCGuuuACGGCUUCGcguggACGUGGCCa -3'
miRNA:   3'- -GCCGC--CGU---UGUUGGAGU-----UGCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 102009 0.71 0.600403
Target:  5'- gCGGCGGCgGugGACUgCAGCGUG-CCGu -3'
miRNA:   3'- -GCCGCCG-UugUUGGaGUUGCACcGGC- -5'
6752 3' -56.5 NC_001875.2 + 43588 0.7 0.631126
Target:  5'- gCGGCGaGCGACucgacuGCCUgGuugcGCGUGcGCCGa -3'
miRNA:   3'- -GCCGC-CGUUGu-----UGGAgU----UGCAC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 55718 0.7 0.631126
Target:  5'- aCGGcCGcGCAaauACGGCCg-AGCGUGGCCa -3'
miRNA:   3'- -GCC-GC-CGU---UGUUGGagUUGCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 35495 0.7 0.641378
Target:  5'- uGaGCGGCAugACAACUgccggCAACGggcGGCCGc -3'
miRNA:   3'- gC-CGCCGU--UGUUGGa----GUUGCa--CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 83818 0.7 0.641378
Target:  5'- gGGCGGCG---GCC---ACGUGGCCGc -3'
miRNA:   3'- gCCGCCGUuguUGGaguUGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 75585 0.7 0.650599
Target:  5'- gGGCGGCAaaguacuGCAGCCgcgcgcCGGCGUGuaCGa -3'
miRNA:   3'- gCCGCCGU-------UGUUGGa-----GUUGCACcgGC- -5'
6752 3' -56.5 NC_001875.2 + 36758 0.7 0.651623
Target:  5'- uCGGuuGCAgagcuuguugACAACuCUCAauaACGUGGCCGc -3'
miRNA:   3'- -GCCgcCGU----------UGUUG-GAGU---UGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 10440 0.7 0.651623
Target:  5'- uGGC-GCAGCAGCUUUGACGcGGCgCGg -3'
miRNA:   3'- gCCGcCGUUGUUGGAGUUGCaCCG-GC- -5'
6752 3' -56.5 NC_001875.2 + 15273 0.7 0.655718
Target:  5'- cCGGCGGCGugGugCUCAaagagauuaaccacaAUGUucGGCUGa -3'
miRNA:   3'- -GCCGCCGUugUugGAGU---------------UGCA--CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 88945 0.7 0.655718
Target:  5'- gCGGCuGC-ACAGCCUCGACGUugaacgcguugcgcuGGCgGa -3'
miRNA:   3'- -GCCGcCGuUGUUGGAGUUGCA---------------CCGgC- -5'
6752 3' -56.5 NC_001875.2 + 54797 0.7 0.661853
Target:  5'- gGGCGGCAcuaGC-ACCgCGACGcGGCUGc -3'
miRNA:   3'- gCCGCCGU---UGuUGGaGUUGCaCCGGC- -5'
6752 3' -56.5 NC_001875.2 + 73094 0.7 0.661853
Target:  5'- -cGCGcGCAuACAGcuCCUCAAuCGUGGCCGc -3'
miRNA:   3'- gcCGC-CGU-UGUU--GGAGUU-GCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 129558 0.7 0.672058
Target:  5'- aCGGCGcGCGcgcaucACGACgUCAACaUGGCCc -3'
miRNA:   3'- -GCCGC-CGU------UGUUGgAGUUGcACCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.