miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 3' -56.5 NC_001875.2 + 32567 0.66 0.872351
Target:  5'- gCGGCuGCAGCAgugccgcgcgcACCUCGACua-GCCGu -3'
miRNA:   3'- -GCCGcCGUUGU-----------UGGAGUUGcacCGGC- -5'
6752 3' -56.5 NC_001875.2 + 33667 0.79 0.24172
Target:  5'- uCGGCGGCGugguaaaacaaACGGCC-CGACGUGcGCCGc -3'
miRNA:   3'- -GCCGCCGU-----------UGUUGGaGUUGCAC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 33872 0.67 0.84139
Target:  5'- gCGGcCGGCAgaACGGCgUUucgGUGGCCGc -3'
miRNA:   3'- -GCC-GCCGU--UGUUGgAGuugCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 35495 0.7 0.641378
Target:  5'- uGaGCGGCAugACAACUgccggCAACGggcGGCCGc -3'
miRNA:   3'- gC-CGCCGU--UGUUGGa----GUUGCa--CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 36758 0.7 0.651623
Target:  5'- uCGGuuGCAgagcuuguugACAACuCUCAauaACGUGGCCGc -3'
miRNA:   3'- -GCCgcCGU----------UGUUG-GAGU---UGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 39043 0.74 0.426174
Target:  5'- uCGGCGGCGGCGcuguACCgcaAGCGcaUGGCCa -3'
miRNA:   3'- -GCCGCCGUUGU----UGGag-UUGC--ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 39126 0.8 0.213929
Target:  5'- uGGCGGCGACGACCcugaccggCGAUGaUGGCCa -3'
miRNA:   3'- gCCGCCGUUGUUGGa-------GUUGC-ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 39639 0.66 0.872351
Target:  5'- uGGCGcGCAGCgAACCgcgcGCGaguuugGGCCGg -3'
miRNA:   3'- gCCGC-CGUUG-UUGGagu-UGCa-----CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 41999 0.66 0.88656
Target:  5'- aCGGCGGUGAaAAaaUCGGCG-GGCCc -3'
miRNA:   3'- -GCCGCCGUUgUUggAGUUGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 42990 0.67 0.816145
Target:  5'- aGGCGGCGGCcguugcgaagguGGCCUCcauuGCGaGuGCCGc -3'
miRNA:   3'- gCCGCCGUUG------------UUGGAGu---UGCaC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 43588 0.7 0.631126
Target:  5'- gCGGCGaGCGACucgacuGCCUgGuugcGCGUGcGCCGa -3'
miRNA:   3'- -GCCGC-CGUUGu-----UGGAgU----UGCAC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 43595 0.69 0.732294
Target:  5'- aCGGCGGCAGCGGC---GGCGcGcGCCGc -3'
miRNA:   3'- -GCCGCCGUUGUUGgagUUGCaC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 46298 0.67 0.807384
Target:  5'- aGGCGcccgucuaGCAugAACCgCGugcugaucACGUGGCCGc -3'
miRNA:   3'- gCCGC--------CGUugUUGGaGU--------UGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 47342 0.67 0.824739
Target:  5'- uCGGCGGCGGCcaauGACCUaauuGCGUGuGUg- -3'
miRNA:   3'- -GCCGCCGUUG----UUGGAgu--UGCAC-CGgc -5'
6752 3' -56.5 NC_001875.2 + 48019 0.72 0.569892
Target:  5'- -cGUGGUGGCGGCC-C-ACGUGGCCGc -3'
miRNA:   3'- gcCGCCGUUGUUGGaGuUGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 48258 0.66 0.879566
Target:  5'- aCGGCGGCGccccgccgggAC-ACCUC-AUGUGuccGCCGc -3'
miRNA:   3'- -GCCGCCGU----------UGuUGGAGuUGCAC---CGGC- -5'
6752 3' -56.5 NC_001875.2 + 50017 0.67 0.84139
Target:  5'- gGGCGcGCGugGucGCCgggCGGCGaggcGGCCGg -3'
miRNA:   3'- gCCGC-CGUugU--UGGa--GUUGCa---CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 50455 0.68 0.76136
Target:  5'- uCGGCGGUucuuaaacACAAUCaggagCGACGcGGCCGg -3'
miRNA:   3'- -GCCGCCGu-------UGUUGGa----GUUGCaCCGGC- -5'
6752 3' -56.5 NC_001875.2 + 50880 0.67 0.816145
Target:  5'- gGGCGGCGcggccACGaaAUCUUGACG-GGCCc -3'
miRNA:   3'- gCCGCCGU-----UGU--UGGAGUUGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 53557 0.67 0.816145
Target:  5'- uGGCGGCcauCAACUUUu-CGuUGGCCa -3'
miRNA:   3'- gCCGCCGuu-GUUGGAGuuGC-ACCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.