miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 3' -56.5 NC_001875.2 + 4426 0.66 0.88656
Target:  5'- aCGGCGGCAugcugACGcgcGCCgcCAGCacuuUGGCCa -3'
miRNA:   3'- -GCCGCCGU-----UGU---UGGa-GUUGc---ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 5945 0.68 0.780178
Target:  5'- aGGUGGgcGCGGCCUCGcaguacacgugaAUGUGGUCGc -3'
miRNA:   3'- gCCGCCguUGUUGGAGU------------UGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 6972 0.7 0.682232
Target:  5'- aCGGCGcGCugcuuGACAgcgggcaucuuuGCUUCGACGUGGCgCGc -3'
miRNA:   3'- -GCCGC-CG-----UUGU------------UGGAGUUGCACCG-GC- -5'
6752 3' -56.5 NC_001875.2 + 7086 0.66 0.88656
Target:  5'- gGGCGGCAGCuACUaCGuGCGcGGCuCGg -3'
miRNA:   3'- gCCGCCGUUGuUGGaGU-UGCaCCG-GC- -5'
6752 3' -56.5 NC_001875.2 + 7115 0.69 0.722419
Target:  5'- aCGGCGGCGaaACGGCCgacGCGUG-CCu -3'
miRNA:   3'- -GCCGCCGU--UGUUGGaguUGCACcGGc -5'
6752 3' -56.5 NC_001875.2 + 10143 0.68 0.789392
Target:  5'- gGGCGuGUuccGCAAgCgcggCGugGUGGCCGa -3'
miRNA:   3'- gCCGC-CGu--UGUUgGa---GUugCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 10440 0.7 0.651623
Target:  5'- uGGC-GCAGCAGCUUUGACGcGGCgCGg -3'
miRNA:   3'- gCCGcCGUUGUUGGAGUUGCaCCG-GC- -5'
6752 3' -56.5 NC_001875.2 + 12843 0.69 0.722419
Target:  5'- cCGGCGGCGcCGGCUagcacgCAGCcGUGGuuGg -3'
miRNA:   3'- -GCCGCCGUuGUUGGa-----GUUG-CACCggC- -5'
6752 3' -56.5 NC_001875.2 + 12968 0.66 0.849434
Target:  5'- gCGGCgGGCGugGGCUccgcgcCGugGUGGCUa -3'
miRNA:   3'- -GCCG-CCGUugUUGGa-----GUugCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 15273 0.7 0.655718
Target:  5'- cCGGCGGCGugGugCUCAaagagauuaaccacaAUGUucGGCUGa -3'
miRNA:   3'- -GCCGCCGUugUugGAGU---------------UGCA--CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 15725 0.66 0.872351
Target:  5'- aGGUGuGCGAgGACCcCAACGcGGUCu -3'
miRNA:   3'- gCCGC-CGUUgUUGGaGUUGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 15920 0.66 0.857279
Target:  5'- cCGGCaccGGCAACAugACC-CAGC-UGGCgGg -3'
miRNA:   3'- -GCCG---CCGUUGU--UGGaGUUGcACCGgC- -5'
6752 3' -56.5 NC_001875.2 + 17772 0.69 0.73131
Target:  5'- aCGGCGGCGuugcaguACAGCUUguaCAAgGUGGCg- -3'
miRNA:   3'- -GCCGCCGU-------UGUUGGA---GUUgCACCGgc -5'
6752 3' -56.5 NC_001875.2 + 19953 0.71 0.599382
Target:  5'- cCGGC-GCGACGguccggccggcGCCUCGccguugcugacguGCGUGGCCa -3'
miRNA:   3'- -GCCGcCGUUGU-----------UGGAGU-------------UGCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 20405 0.78 0.278967
Target:  5'- aCGGCGGuCggUGAUCacCAACGUGGCCGa -3'
miRNA:   3'- -GCCGCC-GuuGUUGGa-GUUGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 25996 0.67 0.803834
Target:  5'- aCGGCGGCucgcuggaccccAACAGCCgcgucgaggaaacCAugaagacgcuugACGUGGCCa -3'
miRNA:   3'- -GCCGCCG------------UUGUUGGa------------GU------------UGCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 27136 0.72 0.539775
Target:  5'- uGGCGGCcACAccaccaGCCUUAGCGacauugccgacaUGGCCa -3'
miRNA:   3'- gCCGCCGuUGU------UGGAGUUGC------------ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 30214 0.67 0.824739
Target:  5'- aCGGCcguuguGGCGACcACUUUGuACGUGGUCGc -3'
miRNA:   3'- -GCCG------CCGUUGuUGGAGU-UGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 31035 0.66 0.849434
Target:  5'- -aGCGGC--CGACC-CGGCGcGGCCGu -3'
miRNA:   3'- gcCGCCGuuGUUGGaGUUGCaCCGGC- -5'
6752 3' -56.5 NC_001875.2 + 32395 0.67 0.833156
Target:  5'- gGGCGGCGACGcaaaaguuguggGCgaCGGCGcaaagucucUGGCCa -3'
miRNA:   3'- gCCGCCGUUGU------------UGgaGUUGC---------ACCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.