miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 3' -56.5 NC_001875.2 + 17772 0.69 0.73131
Target:  5'- aCGGCGGCGuugcaguACAGCUUguaCAAgGUGGCg- -3'
miRNA:   3'- -GCCGCCGU-------UGUUGGA---GUUgCACCGgc -5'
6752 3' -56.5 NC_001875.2 + 124247 0.7 0.672058
Target:  5'- gCGGCGGCAcaaugACGACaggCGGCGcguUGGUCGu -3'
miRNA:   3'- -GCCGCCGU-----UGUUGga-GUUGC---ACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 129558 0.7 0.672058
Target:  5'- aCGGCGcGCGcgcaucACGACgUCAACaUGGCCc -3'
miRNA:   3'- -GCCGC-CGU------UGUUGgAGUUGcACCGGc -5'
6752 3' -56.5 NC_001875.2 + 6972 0.7 0.682232
Target:  5'- aCGGCGcGCugcuuGACAgcgggcaucuuuGCUUCGACGUGGCgCGc -3'
miRNA:   3'- -GCCGC-CG-----UUGU------------UGGAGUUGCACCG-GC- -5'
6752 3' -56.5 NC_001875.2 + 111794 0.7 0.682232
Target:  5'- aCGGCGGUGcacGCGGCCgaCGGCGccUGGCUGc -3'
miRNA:   3'- -GCCGCCGU---UGUUGGa-GUUGC--ACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 72337 0.69 0.692363
Target:  5'- gCGGCGGCAcauGgGGCaCUCGACGcgcuugucucGGCCGc -3'
miRNA:   3'- -GCCGCCGU---UgUUG-GAGUUGCa---------CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 101031 0.69 0.692363
Target:  5'- uGGUGGC-ACAGCCUaCAGCGUuugaguGGCgGc -3'
miRNA:   3'- gCCGCCGuUGUUGGA-GUUGCA------CCGgC- -5'
6752 3' -56.5 NC_001875.2 + 102714 0.69 0.696402
Target:  5'- uGGCGGCccacgggucguggauAGCGACCUUAaagucuGCGcGGCCu -3'
miRNA:   3'- gCCGCCG---------------UUGUUGGAGU------UGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 65725 0.69 0.722419
Target:  5'- gGGCGGC-GCcGCCUCGccgcccgccGCGcgGGCCu -3'
miRNA:   3'- gCCGCCGuUGuUGGAGU---------UGCa-CCGGc -5'
6752 3' -56.5 NC_001875.2 + 10440 0.7 0.651623
Target:  5'- uGGC-GCAGCAGCUUUGACGcGGCgCGg -3'
miRNA:   3'- gCCGcCGUUGUUGGAGUUGCaCCG-GC- -5'
6752 3' -56.5 NC_001875.2 + 55718 0.7 0.631126
Target:  5'- aCGGcCGcGCAaauACGGCCg-AGCGUGGCCa -3'
miRNA:   3'- -GCC-GC-CGU---UGUUGGagUUGCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 43588 0.7 0.631126
Target:  5'- gCGGCGaGCGACucgacuGCCUgGuugcGCGUGcGCCGa -3'
miRNA:   3'- -GCCGC-CGUUGu-----UGGAgU----UGCAC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 20405 0.78 0.278967
Target:  5'- aCGGCGGuCggUGAUCacCAACGUGGCCGa -3'
miRNA:   3'- -GCCGCC-GuuGUUGGa-GUUGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 71130 0.77 0.299243
Target:  5'- -uGUGGCugGGCGGCCUCAGCGcGGCCGc -3'
miRNA:   3'- gcCGCCG--UUGUUGGAGUUGCaCCGGC- -5'
6752 3' -56.5 NC_001875.2 + 68561 0.76 0.350922
Target:  5'- gCGGCGGCGGCggUCgcgCAccGCGUGGCg- -3'
miRNA:   3'- -GCCGCCGUUGuuGGa--GU--UGCACCGgc -5'
6752 3' -56.5 NC_001875.2 + 88563 0.75 0.383179
Target:  5'- gCGGCGGCugaacaccuACAACCUCAgccACGUGGaaaugaCGg -3'
miRNA:   3'- -GCCGCCGu--------UGUUGGAGU---UGCACCg-----GC- -5'
6752 3' -56.5 NC_001875.2 + 39043 0.74 0.426174
Target:  5'- uCGGCGGCGGCGcuguACCgcaAGCGcaUGGCCa -3'
miRNA:   3'- -GCCGCCGUUGU----UGGag-UUGC--ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 75244 0.73 0.500511
Target:  5'- aCGGCgauGGCGGCGGCgUCGGCGaUGGCgGc -3'
miRNA:   3'- -GCCG---CCGUUGUUGgAGUUGC-ACCGgC- -5'
6752 3' -56.5 NC_001875.2 + 113624 0.72 0.569892
Target:  5'- gCGGCGGCAAgAGCggCGACG-GcGCCGc -3'
miRNA:   3'- -GCCGCCGUUgUUGgaGUUGCaC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 48019 0.72 0.569892
Target:  5'- -cGUGGUGGCGGCC-C-ACGUGGCCGc -3'
miRNA:   3'- gcCGCCGUUGUUGGaGuUGCACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.