Results 1 - 20 of 139 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 104845 | 1.1 | 0.002047 |
Target: 5'- aCGGCGGCAACAACCUCAACGUGGCCGa -3' miRNA: 3'- -GCCGCCGUUGUUGGAGUUGCACCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 102009 | 0.71 | 0.600403 |
Target: 5'- gCGGCGGCgGugGACUgCAGCGUG-CCGu -3' miRNA: 3'- -GCCGCCG-UugUUGGaGUUGCACcGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 35495 | 0.7 | 0.641378 |
Target: 5'- uGaGCGGCAugACAACUgccggCAACGggcGGCCGc -3' miRNA: 3'- gC-CGCCGU--UGUUGGa----GUUGCa--CCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 69238 | 0.66 | 0.88656 |
Target: 5'- aCGGCGGCGuCGAa--CGGCGcgcugGGCCGc -3' miRNA: 3'- -GCCGCCGUuGUUggaGUUGCa----CCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 129931 | 0.79 | 0.24172 |
Target: 5'- uGGCGGCGGCAugCUC---GUGGCCa -3' miRNA: 3'- gCCGCCGUUGUugGAGuugCACCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 33667 | 0.79 | 0.24172 |
Target: 5'- uCGGCGGCGugguaaaacaaACGGCC-CGACGUGcGCCGc -3' miRNA: 3'- -GCCGCCGU-----------UGUUGGaGUUGCAC-CGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 64334 | 0.76 | 0.343165 |
Target: 5'- gGGCGaaAACGGCUUCAACGUGGCg- -3' miRNA: 3'- gCCGCcgUUGUUGGAGUUGCACCGgc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 67358 | 0.76 | 0.348582 |
Target: 5'- gGGCGGCAACAACCgCGAcucguccaccggcuCGUcGGCCa -3' miRNA: 3'- gCCGCCGUUGUUGGaGUU--------------GCA-CCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 125757 | 0.73 | 0.481353 |
Target: 5'- gGGCGGCuauuACGGCgaCAACGaGGCCa -3' miRNA: 3'- gCCGCCGu---UGUUGgaGUUGCaCCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 89181 | 0.71 | 0.600403 |
Target: 5'- uGGC-GCAAauCAGCCUCGACGcGGaCCGg -3' miRNA: 3'- gCCGcCGUU--GUUGGAGUUGCaCC-GGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 73791 | 0.72 | 0.569892 |
Target: 5'- uGGCGGCGGCGGCUggaacggCAGCGc-GCCGc -3' miRNA: 3'- gCCGCCGUUGUUGGa------GUUGCacCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 94761 | 0.73 | 0.481353 |
Target: 5'- gCGGCGGUGuCGuccGCCaaacaCAGCGUGGCCGc -3' miRNA: 3'- -GCCGCCGUuGU---UGGa----GUUGCACCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 129975 | 0.81 | 0.175187 |
Target: 5'- gCGGCGGCGGCGGCggCAugcuCGUGGCCa -3' miRNA: 3'- -GCCGCCGUUGUUGgaGUu---GCACCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 125469 | 0.71 | 0.5902 |
Target: 5'- cCGcGCGGUgcccGACGACgaCAuCGUGGCCGa -3' miRNA: 3'- -GC-CGCCG----UUGUUGgaGUuGCACCGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 130020 | 0.79 | 0.224701 |
Target: 5'- gCGGCGGCGGCAugCUCGugGUcacauccGCCGa -3' miRNA: 3'- -GCCGCCGUUGUugGAGUugCAc------CGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 130113 | 0.74 | 0.434213 |
Target: 5'- gCGGCGGCGGCGcgaccggugucgcGCCcgCAGCauuuGUGGCCa -3' miRNA: 3'- -GCCGCCGUUGU-------------UGGa-GUUG----CACCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 19953 | 0.71 | 0.599382 |
Target: 5'- cCGGC-GCGACGguccggccggcGCCUCGccguugcugacguGCGUGGCCa -3' miRNA: 3'- -GCCGcCGUUGU-----------UGGAGU-------------UGCACCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 86099 | 0.71 | 0.600403 |
Target: 5'- uCGGCGccGCGuuuACGGCUUCGcguggACGUGGCCa -3' miRNA: 3'- -GCCGC--CGU---UGUUGGAGU-----UGCACCGGc -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 130068 | 0.79 | 0.224701 |
Target: 5'- gCGGCGGCGGCAugCUCGugGUcacauccGCCGa -3' miRNA: 3'- -GCCGCCGUUGUugGAGUugCAc------CGGC- -5' |
|||||||
6752 | 3' | -56.5 | NC_001875.2 | + | 96301 | 0.76 | 0.320641 |
Target: 5'- aGGCGGCcgggugGGCGGCCagCAcCGUGGCCGc -3' miRNA: 3'- gCCGCCG------UUGUUGGa-GUuGCACCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home