miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 3' -56.5 NC_001875.2 + 104845 1.1 0.002047
Target:  5'- aCGGCGGCAACAACCUCAACGUGGCCGa -3'
miRNA:   3'- -GCCGCCGUUGUUGGAGUUGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 129975 0.81 0.175187
Target:  5'- gCGGCGGCGGCGGCggCAugcuCGUGGCCa -3'
miRNA:   3'- -GCCGCCGUUGUUGgaGUu---GCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 39126 0.8 0.213929
Target:  5'- uGGCGGCGACGACCcugaccggCGAUGaUGGCCa -3'
miRNA:   3'- gCCGCCGUUGUUGGa-------GUUGC-ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 130020 0.79 0.224701
Target:  5'- gCGGCGGCGGCAugCUCGugGUcacauccGCCGa -3'
miRNA:   3'- -GCCGCCGUUGUugGAGUugCAc------CGGC- -5'
6752 3' -56.5 NC_001875.2 + 130068 0.79 0.224701
Target:  5'- gCGGCGGCGGCAugCUCGugGUcacauccGCCGa -3'
miRNA:   3'- -GCCGCCGUUGUugGAGUugCAc------CGGC- -5'
6752 3' -56.5 NC_001875.2 + 129931 0.79 0.24172
Target:  5'- uGGCGGCGGCAugCUC---GUGGCCa -3'
miRNA:   3'- gCCGCCGUUGUugGAGuugCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 33667 0.79 0.24172
Target:  5'- uCGGCGGCGugguaaaacaaACGGCC-CGACGUGcGCCGc -3'
miRNA:   3'- -GCCGCCGU-----------UGUUGGaGUUGCAC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 20405 0.78 0.278967
Target:  5'- aCGGCGGuCggUGAUCacCAACGUGGCCGa -3'
miRNA:   3'- -GCCGCC-GuuGUUGGa-GUUGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 71130 0.77 0.299243
Target:  5'- -uGUGGCugGGCGGCCUCAGCGcGGCCGc -3'
miRNA:   3'- gcCGCCG--UUGUUGGAGUUGCaCCGGC- -5'
6752 3' -56.5 NC_001875.2 + 96301 0.76 0.320641
Target:  5'- aGGCGGCcgggugGGCGGCCagCAcCGUGGCCGc -3'
miRNA:   3'- gCCGCCG------UUGUUGGa-GUuGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 64334 0.76 0.343165
Target:  5'- gGGCGaaAACGGCUUCAACGUGGCg- -3'
miRNA:   3'- gCCGCcgUUGUUGGAGUUGCACCGgc -5'
6752 3' -56.5 NC_001875.2 + 67358 0.76 0.348582
Target:  5'- gGGCGGCAACAACCgCGAcucguccaccggcuCGUcGGCCa -3'
miRNA:   3'- gCCGCCGUUGUUGGaGUU--------------GCA-CCGGc -5'
6752 3' -56.5 NC_001875.2 + 68561 0.76 0.350922
Target:  5'- gCGGCGGCGGCggUCgcgCAccGCGUGGCg- -3'
miRNA:   3'- -GCCGCCGUUGuuGGa--GU--UGCACCGgc -5'
6752 3' -56.5 NC_001875.2 + 88563 0.75 0.383179
Target:  5'- gCGGCGGCugaacaccuACAACCUCAgccACGUGGaaaugaCGg -3'
miRNA:   3'- -GCCGCCGu--------UGUUGGAGU---UGCACCg-----GC- -5'
6752 3' -56.5 NC_001875.2 + 39043 0.74 0.426174
Target:  5'- uCGGCGGCGGCGcuguACCgcaAGCGcaUGGCCa -3'
miRNA:   3'- -GCCGCCGUUGU----UGGag-UUGC--ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 130113 0.74 0.434213
Target:  5'- gCGGCGGCGGCGcgaccggugucgcGCCcgCAGCauuuGUGGCCa -3'
miRNA:   3'- -GCCGCCGUUGU-------------UGGa-GUUG----CACCGGc -5'
6752 3' -56.5 NC_001875.2 + 125757 0.73 0.481353
Target:  5'- gGGCGGCuauuACGGCgaCAACGaGGCCa -3'
miRNA:   3'- gCCGCCGu---UGUUGgaGUUGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 94761 0.73 0.481353
Target:  5'- gCGGCGGUGuCGuccGCCaaacaCAGCGUGGCCGc -3'
miRNA:   3'- -GCCGCCGUuGU---UGGa----GUUGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 75244 0.73 0.500511
Target:  5'- aCGGCgauGGCGGCGGCgUCGGCGaUGGCgGc -3'
miRNA:   3'- -GCCG---CCGUUGUUGgAGUUGC-ACCGgC- -5'
6752 3' -56.5 NC_001875.2 + 27136 0.72 0.539775
Target:  5'- uGGCGGCcACAccaccaGCCUUAGCGacauugccgacaUGGCCa -3'
miRNA:   3'- gCCGCCGuUGU------UGGAGUUGC------------ACCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.