miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 3' -56.5 NC_001875.2 + 70196 0.66 0.878854
Target:  5'- gGGCGGCGACGgcgaccacugggcGCCcgaGGCGccGCCGa -3'
miRNA:   3'- gCCGCCGUUGU-------------UGGag-UUGCacCGGC- -5'
6752 3' -56.5 NC_001875.2 + 41999 0.66 0.88656
Target:  5'- aCGGCGGUGAaAAaaUCGGCG-GGCCc -3'
miRNA:   3'- -GCCGCCGUUgUUggAGUUGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 4426 0.66 0.88656
Target:  5'- aCGGCGGCAugcugACGcgcGCCgcCAGCacuuUGGCCa -3'
miRNA:   3'- -GCCGCCGU-----UGU---UGGa-GUUGc---ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 48258 0.66 0.879566
Target:  5'- aCGGCGGCGccccgccgggAC-ACCUC-AUGUGuccGCCGc -3'
miRNA:   3'- -GCCGCCGU----------UGuUGGAGuUGCAC---CGGC- -5'
6752 3' -56.5 NC_001875.2 + 77347 0.66 0.879566
Target:  5'- uGGCgcacGGCGACAACaaggUCAgccagguguACGUGGCgGa -3'
miRNA:   3'- gCCG----CCGUUGUUGg---AGU---------UGCACCGgC- -5'
6752 3' -56.5 NC_001875.2 + 39639 0.66 0.872351
Target:  5'- uGGCGcGCAGCgAACCgcgcGCGaguuugGGCCGg -3'
miRNA:   3'- gCCGC-CGUUG-UUGGagu-UGCa-----CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 55350 0.66 0.88656
Target:  5'- uCGGgGGC-GCcGCCUCGucguCGUccgcGGCCGu -3'
miRNA:   3'- -GCCgCCGuUGuUGGAGUu---GCA----CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 82073 0.66 0.879566
Target:  5'- cCGGgGGCuuuGCGGCCUaCAuacugGGCCGc -3'
miRNA:   3'- -GCCgCCGu--UGUUGGA-GUugca-CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 97025 0.66 0.88656
Target:  5'- aCGGCGGCAGCGuCgUaAACGcuuGCCGg -3'
miRNA:   3'- -GCCGCCGUUGUuGgAgUUGCac-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 69238 0.66 0.88656
Target:  5'- aCGGCGGCGuCGAa--CGGCGcgcugGGCCGc -3'
miRNA:   3'- -GCCGCCGUuGUUggaGUUGCa----CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 110002 0.66 0.88656
Target:  5'- uCGGUGGCGuugacgcgcgcGCAG-CUCGACcaGUGGCgCGa -3'
miRNA:   3'- -GCCGCCGU-----------UGUUgGAGUUG--CACCG-GC- -5'
6752 3' -56.5 NC_001875.2 + 120050 0.66 0.872351
Target:  5'- gCGGcCGGCAACAacuACCUgAACa-GGCUa -3'
miRNA:   3'- -GCC-GCCGUUGU---UGGAgUUGcaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 127276 0.66 0.849434
Target:  5'- aGcGCGGCAACAuuGCUUgcCGACGUGcGCUc -3'
miRNA:   3'- gC-CGCCGUUGU--UGGA--GUUGCAC-CGGc -5'
6752 3' -56.5 NC_001875.2 + 12968 0.66 0.849434
Target:  5'- gCGGCgGGCGugGGCUccgcgcCGugGUGGCUa -3'
miRNA:   3'- -GCCG-CCGUugUUGGa-----GUugCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 116194 0.66 0.849434
Target:  5'- uGGCGuGCGucuGCAccGCCUCAGgGUGGaaGu -3'
miRNA:   3'- gCCGC-CGU---UGU--UGGAGUUgCACCggC- -5'
6752 3' -56.5 NC_001875.2 + 15725 0.66 0.872351
Target:  5'- aGGUGuGCGAgGACCcCAACGcGGUCu -3'
miRNA:   3'- gCCGC-CGUUgUUGGaGUUGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 15920 0.66 0.857279
Target:  5'- cCGGCaccGGCAACAugACC-CAGC-UGGCgGg -3'
miRNA:   3'- -GCCG---CCGUUGU--UGGaGUUGcACCGgC- -5'
6752 3' -56.5 NC_001875.2 + 75497 0.66 0.849434
Target:  5'- uGGCgucGGCGAUGGCgUCGGCGaUGGCg- -3'
miRNA:   3'- gCCG---CCGUUGUUGgAGUUGC-ACCGgc -5'
6752 3' -56.5 NC_001875.2 + 84410 0.66 0.849434
Target:  5'- uCGGCGGCGGCGcguauagguGCCaUCGGCGgaucgGGagCGg -3'
miRNA:   3'- -GCCGCCGUUGU---------UGG-AGUUGCa----CCg-GC- -5'
6752 3' -56.5 NC_001875.2 + 117096 0.66 0.849434
Target:  5'- uGGUGGCAaaccgcagaaGCGACUUCA---UGGCCu -3'
miRNA:   3'- gCCGCCGU----------UGUUGGAGUugcACCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.