miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 3' -56.5 NC_001875.2 + 75497 0.66 0.849434
Target:  5'- uGGCgucGGCGAUGGCgUCGGCGaUGGCg- -3'
miRNA:   3'- gCCG---CCGUUGUUGgAGUUGC-ACCGgc -5'
6752 3' -56.5 NC_001875.2 + 127276 0.66 0.849434
Target:  5'- aGcGCGGCAACAuuGCUUgcCGACGUGcGCUc -3'
miRNA:   3'- gC-CGCCGUUGU--UGGA--GUUGCAC-CGGc -5'
6752 3' -56.5 NC_001875.2 + 120815 0.66 0.849434
Target:  5'- aCGGC-GCAGCAGCaaCGACGagGGCUa -3'
miRNA:   3'- -GCCGcCGUUGUUGgaGUUGCa-CCGGc -5'
6752 3' -56.5 NC_001875.2 + 12968 0.66 0.849434
Target:  5'- gCGGCgGGCGugGGCUccgcgcCGugGUGGCUa -3'
miRNA:   3'- -GCCG-CCGUugUUGGa-----GUugCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 120050 0.66 0.872351
Target:  5'- gCGGcCGGCAACAacuACCUgAACa-GGCUa -3'
miRNA:   3'- -GCC-GCCGUUGU---UGGAgUUGcaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 98755 0.66 0.856504
Target:  5'- aGaCGGCAAguGCC-CGacgugccggcaagACGUGGCCGa -3'
miRNA:   3'- gCcGCCGUUguUGGaGU-------------UGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 39639 0.66 0.872351
Target:  5'- uGGCGcGCAGCgAACCgcgcGCGaguuugGGCCGg -3'
miRNA:   3'- gCCGC-CGUUG-UUGGagu-UGCa-----CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 70196 0.66 0.878854
Target:  5'- gGGCGGCGACGgcgaccacugggcGCCcgaGGCGccGCCGa -3'
miRNA:   3'- gCCGCCGUUGU-------------UGGag-UUGCacCGGC- -5'
6752 3' -56.5 NC_001875.2 + 48258 0.66 0.879566
Target:  5'- aCGGCGGCGccccgccgggAC-ACCUC-AUGUGuccGCCGc -3'
miRNA:   3'- -GCCGCCGU----------UGuUGGAGuUGCAC---CGGC- -5'
6752 3' -56.5 NC_001875.2 + 77347 0.66 0.879566
Target:  5'- uGGCgcacGGCGACAACaaggUCAgccagguguACGUGGCgGa -3'
miRNA:   3'- gCCG----CCGUUGUUGg---AGU---------UGCACCGgC- -5'
6752 3' -56.5 NC_001875.2 + 84410 0.66 0.849434
Target:  5'- uCGGCGGCGGCGcguauagguGCCaUCGGCGgaucgGGagCGg -3'
miRNA:   3'- -GCCGCCGUUGU---------UGG-AGUUGCa----CCg-GC- -5'
6752 3' -56.5 NC_001875.2 + 97424 0.67 0.798463
Target:  5'- gCGGCGGCGACcgcguacguaAACCUCAuugAUGUGcaCCa -3'
miRNA:   3'- -GCCGCCGUUG----------UUGGAGU---UGCACc-GGc -5'
6752 3' -56.5 NC_001875.2 + 115439 0.67 0.828127
Target:  5'- uGGCGGCGACGaacaccgcACCUaccGCGUugagcuagcgggcgcGGCCa -3'
miRNA:   3'- gCCGCCGUUGU--------UGGAgu-UGCA---------------CCGGc -5'
6752 3' -56.5 NC_001875.2 + 77629 0.67 0.824739
Target:  5'- uCGGCGGCAACGGCUcgggUCug-GU-GCCGa -3'
miRNA:   3'- -GCCGCCGUUGUUGG----AGuugCAcCGGC- -5'
6752 3' -56.5 NC_001875.2 + 65523 0.67 0.824739
Target:  5'- aCGGCGGCcGCccacGCCaUCAACucgccGGCCGc -3'
miRNA:   3'- -GCCGCCGuUGu---UGG-AGUUGca---CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 64950 0.67 0.816145
Target:  5'- gGGCuGCAgaaagaGCugcGCCaaaaCAGCGUGGCCGa -3'
miRNA:   3'- gCCGcCGU------UGu--UGGa---GUUGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 69279 0.67 0.807384
Target:  5'- uGGCGGCGGCAaguccACCcgcaCAACGUuuGCCa -3'
miRNA:   3'- gCCGCCGUUGU-----UGGa---GUUGCAc-CGGc -5'
6752 3' -56.5 NC_001875.2 + 25996 0.67 0.803834
Target:  5'- aCGGCGGCucgcuggaccccAACAGCCgcgucgaggaaacCAugaagacgcuugACGUGGCCa -3'
miRNA:   3'- -GCCGCCG------------UUGUUGGa------------GU------------UGCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 73706 0.67 0.816145
Target:  5'- gCGGCGGCuGCGGCUguugggguuggUCGggAgGUGGCUGc -3'
miRNA:   3'- -GCCGCCGuUGUUGG-----------AGU--UgCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 93212 0.67 0.80205
Target:  5'- uCGGCGGCGuuaaacugguuuuccACAGcggugcgcuCCUCGACGcgcagcUGGCCc -3'
miRNA:   3'- -GCCGCCGU---------------UGUU---------GGAGUUGC------ACCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.