miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6752 3' -56.5 NC_001875.2 + 130113 0.74 0.434213
Target:  5'- gCGGCGGCGGCGcgaccggugucgcGCCcgCAGCauuuGUGGCCa -3'
miRNA:   3'- -GCCGCCGUUGU-------------UGGa-GUUG----CACCGGc -5'
6752 3' -56.5 NC_001875.2 + 130068 0.79 0.224701
Target:  5'- gCGGCGGCGGCAugCUCGugGUcacauccGCCGa -3'
miRNA:   3'- -GCCGCCGUUGUugGAGUugCAc------CGGC- -5'
6752 3' -56.5 NC_001875.2 + 130020 0.79 0.224701
Target:  5'- gCGGCGGCGGCAugCUCGugGUcacauccGCCGa -3'
miRNA:   3'- -GCCGCCGUUGUugGAGUugCAc------CGGC- -5'
6752 3' -56.5 NC_001875.2 + 129975 0.81 0.175187
Target:  5'- gCGGCGGCGGCGGCggCAugcuCGUGGCCa -3'
miRNA:   3'- -GCCGCCGUUGUUGgaGUu---GCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 129931 0.79 0.24172
Target:  5'- uGGCGGCGGCAugCUC---GUGGCCa -3'
miRNA:   3'- gCCGCCGUUGUugGAGuugCACCGGc -5'
6752 3' -56.5 NC_001875.2 + 129558 0.7 0.672058
Target:  5'- aCGGCGcGCGcgcaucACGACgUCAACaUGGCCc -3'
miRNA:   3'- -GCCGC-CGU------UGUUGgAGUUGcACCGGc -5'
6752 3' -56.5 NC_001875.2 + 128004 0.7 0.682232
Target:  5'- uGGaGGCuGCGGCCgcgcCGGCGUGcGCCGa -3'
miRNA:   3'- gCCgCCGuUGUUGGa---GUUGCAC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 127276 0.66 0.849434
Target:  5'- aGcGCGGCAACAuuGCUUgcCGACGUGcGCUc -3'
miRNA:   3'- gC-CGCCGUUGU--UGGA--GUUGCAC-CGGc -5'
6752 3' -56.5 NC_001875.2 + 126321 0.67 0.824739
Target:  5'- aCGGCGGcCGGCGuaaACUgcgcGCGUGcGCCGg -3'
miRNA:   3'- -GCCGCC-GUUGU---UGGagu-UGCAC-CGGC- -5'
6752 3' -56.5 NC_001875.2 + 125757 0.73 0.481353
Target:  5'- gGGCGGCuauuACGGCgaCAACGaGGCCa -3'
miRNA:   3'- gCCGCCGu---UGUUGgaGUUGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 125469 0.71 0.5902
Target:  5'- cCGcGCGGUgcccGACGACgaCAuCGUGGCCGa -3'
miRNA:   3'- -GC-CGCCG----UUGUUGgaGUuGCACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 124778 0.69 0.732294
Target:  5'- cCGGUGGCGuc-GCCgCAGCGgaaccaGGCCGa -3'
miRNA:   3'- -GCCGCCGUuguUGGaGUUGCa-----CCGGC- -5'
6752 3' -56.5 NC_001875.2 + 124247 0.7 0.672058
Target:  5'- gCGGCGGCAcaaugACGACaggCGGCGcguUGGUCGu -3'
miRNA:   3'- -GCCGCCGU-----UGUUGga-GUUGC---ACCGGC- -5'
6752 3' -56.5 NC_001875.2 + 121461 0.66 0.872351
Target:  5'- gCGGCGGCGuuCAAaguUUUCGGCcaGGCCGu -3'
miRNA:   3'- -GCCGCCGUu-GUU---GGAGUUGcaCCGGC- -5'
6752 3' -56.5 NC_001875.2 + 120965 0.69 0.732294
Target:  5'- uGcGCGGCAGC-GCCacCGACGcGGCCa -3'
miRNA:   3'- gC-CGCCGUUGuUGGa-GUUGCaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 120815 0.66 0.849434
Target:  5'- aCGGC-GCAGCAGCaaCGACGagGGCUa -3'
miRNA:   3'- -GCCGcCGUUGUUGgaGUUGCa-CCGGc -5'
6752 3' -56.5 NC_001875.2 + 120050 0.66 0.872351
Target:  5'- gCGGcCGGCAACAacuACCUgAACa-GGCUa -3'
miRNA:   3'- -GCC-GCCGUUGU---UGGAgUUGcaCCGGc -5'
6752 3' -56.5 NC_001875.2 + 119671 0.69 0.711467
Target:  5'- gCGGCGGCGcacaGCGGCUUCAgccgaaaGCGcUGGuuGc -3'
miRNA:   3'- -GCCGCCGU----UGUUGGAGU-------UGC-ACCggC- -5'
6752 3' -56.5 NC_001875.2 + 119551 0.69 0.742082
Target:  5'- aCGGCGGCGugcCGGCUgCAcACGgUGGCCu -3'
miRNA:   3'- -GCCGCCGUu--GUUGGaGU-UGC-ACCGGc -5'
6752 3' -56.5 NC_001875.2 + 119493 0.68 0.751774
Target:  5'- gGGCuuGGCGaagccgucaaacACGACCUCu-CGcUGGCCGg -3'
miRNA:   3'- gCCG--CCGU------------UGUUGGAGuuGC-ACCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.