miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 3' -55 NC_001875.2 + 33221 0.66 0.907363
Target:  5'- cGCgGGCGcgggcucgccGGGCGCCGuUUCGGCg---- -3'
miRNA:   3'- -CGgCCGC----------UUUGCGGC-AGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 36422 0.74 0.538592
Target:  5'- gGCCGGCGccGCGgUGUCgGGCUggUGc -3'
miRNA:   3'- -CGGCCGCuuUGCgGCAGgCCGAaaAC- -5'
6753 3' -55 NC_001875.2 + 37112 0.77 0.364656
Target:  5'- uGCgGGCGcgGCGCCGcgCCGGCgUUUGc -3'
miRNA:   3'- -CGgCCGCuuUGCGGCa-GGCCGaAAAC- -5'
6753 3' -55 NC_001875.2 + 37585 0.8 0.251277
Target:  5'- cGCCGGCGcGAGCGCCGcggCCGGCc---- -3'
miRNA:   3'- -CGGCCGC-UUUGCGGCa--GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 37640 0.65 0.935288
Target:  5'- gGCuCGGCaAGACGCUGUCCGucauGCg---- -3'
miRNA:   3'- -CG-GCCGcUUUGCGGCAGGC----CGaaaac -5'
6753 3' -55 NC_001875.2 + 38059 0.72 0.661595
Target:  5'- cCCGcGCGAcuuGCGCCGUaaaCGGCUUg-- -3'
miRNA:   3'- cGGC-CGCUu--UGCGGCAg--GCCGAAaac -5'
6753 3' -55 NC_001875.2 + 38302 0.66 0.913434
Target:  5'- cGgUGGCG-AGCGCCGacaaggCCGGCg---- -3'
miRNA:   3'- -CgGCCGCuUUGCGGCa-----GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 39668 0.65 0.935288
Target:  5'- gGCCGGCGgcGCGCgG--CGGCg---- -3'
miRNA:   3'- -CGGCCGCuuUGCGgCagGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 40225 0.73 0.599667
Target:  5'- cGCCGGCGAAACGCgCGUguuuagCGuGCUgUUGa -3'
miRNA:   3'- -CGGCCGCUUUGCG-GCAg-----GC-CGAaAAC- -5'
6753 3' -55 NC_001875.2 + 41806 0.66 0.913434
Target:  5'- cGCCGGC---ACGCgCG-CCGGCg---- -3'
miRNA:   3'- -CGGCCGcuuUGCG-GCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 43790 0.68 0.834114
Target:  5'- uGCUGGCGAcaaacuugAGCGuuGgcaCGGCUUUg- -3'
miRNA:   3'- -CGGCCGCU--------UUGCggCag-GCCGAAAac -5'
6753 3' -55 NC_001875.2 + 46162 0.65 0.935288
Target:  5'- aGCUGGuCGAGuCGCUGcaggCCGGCg---- -3'
miRNA:   3'- -CGGCC-GCUUuGCGGCa---GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 47459 0.67 0.880714
Target:  5'- uCCGGCuaccGACGCCGccCCGGCa---- -3'
miRNA:   3'- cGGCCGcu--UUGCGGCa-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 49640 0.66 0.924848
Target:  5'- -gCGGCGAcacgAGCgGCCG-CCGGCg---- -3'
miRNA:   3'- cgGCCGCU----UUG-CGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 49858 0.71 0.671881
Target:  5'- cGCCGGcCGgcGCGCCuugCCGGCg---- -3'
miRNA:   3'- -CGGCC-GCuuUGCGGca-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 50518 0.69 0.778003
Target:  5'- cGCgCGGCacgaugacgaggagGAGGCGCCG-CCGGCg---- -3'
miRNA:   3'- -CG-GCCG--------------CUUUGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 51544 0.68 0.850471
Target:  5'- cGCUGGCGAAcACGCCGa-CGcGCUUg-- -3'
miRNA:   3'- -CGGCCGCUU-UGCGGCagGC-CGAAaac -5'
6753 3' -55 NC_001875.2 + 53058 0.71 0.712603
Target:  5'- uGCCgGGCGuacCGCUGUCUGGCa---- -3'
miRNA:   3'- -CGG-CCGCuuuGCGGCAGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 54013 0.69 0.799218
Target:  5'- gGCCuuGGCGgcGCGCgCGUaCCGGCa---- -3'
miRNA:   3'- -CGG--CCGCuuUGCG-GCA-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 54590 0.67 0.894506
Target:  5'- cCCGGCGgcGCGCCca-CGGCg---- -3'
miRNA:   3'- cGGCCGCuuUGCGGcagGCCGaaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.