miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 3' -55 NC_001875.2 + 2542 0.68 0.834114
Target:  5'- gGCCGGUGAacAACgGCgCGUCgGGCg---- -3'
miRNA:   3'- -CGGCCGCU--UUG-CG-GCAGgCCGaaaac -5'
6753 3' -55 NC_001875.2 + 4460 0.72 0.620295
Target:  5'- gGCCaGGCucuGAGCGCCGUCCGcGCa---- -3'
miRNA:   3'- -CGG-CCGc--UUUGCGGCAGGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 5133 0.66 0.907363
Target:  5'- cGUCcGCGGAcguGCGCCGcuUCgGGUUUUUGa -3'
miRNA:   3'- -CGGcCGCUU---UGCGGC--AGgCCGAAAAC- -5'
6753 3' -55 NC_001875.2 + 7449 0.66 0.930189
Target:  5'- cGCCGGCGAuuGCGgCGguguaCGGCc---- -3'
miRNA:   3'- -CGGCCGCUu-UGCgGCag---GCCGaaaac -5'
6753 3' -55 NC_001875.2 + 8254 0.69 0.817008
Target:  5'- aGCCGGCGAAucuugugccCGCCGU-UGGCa---- -3'
miRNA:   3'- -CGGCCGCUUu--------GCGGCAgGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 8477 0.67 0.900409
Target:  5'- cGUCGcGCGGAaacaccacgccggGCGCCGUCCGuGUg---- -3'
miRNA:   3'- -CGGC-CGCUU-------------UGCGGCAGGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 9047 0.68 0.834114
Target:  5'- cGCCGGCc--GCGCCGguuuccgcgCCGGUUUc-- -3'
miRNA:   3'- -CGGCCGcuuUGCGGCa--------GGCCGAAaac -5'
6753 3' -55 NC_001875.2 + 17329 0.7 0.732583
Target:  5'- uGCUGGCGGuuGCGCCG-CCGcGCg---- -3'
miRNA:   3'- -CGGCCGCUu-UGCGGCaGGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 18109 0.66 0.930189
Target:  5'- cGCUGGUGGGAguCGCUcaUCGGCUUUg- -3'
miRNA:   3'- -CGGCCGCUUU--GCGGcaGGCCGAAAac -5'
6753 3' -55 NC_001875.2 + 18246 0.66 0.913434
Target:  5'- cGCCGcCGAcucgAACGCCGUgCUGGCc---- -3'
miRNA:   3'- -CGGCcGCU----UUGCGGCA-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 19951 0.72 0.640959
Target:  5'- gGCCGGCGcGACGguCCGgCCGGCg---- -3'
miRNA:   3'- -CGGCCGCuUUGC--GGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 29282 0.78 0.340934
Target:  5'- cGCCGGCGggGCGCgGUCgugUGGCg--UGu -3'
miRNA:   3'- -CGGCCGCuuUGCGgCAG---GCCGaaaAC- -5'
6753 3' -55 NC_001875.2 + 29951 0.69 0.817008
Target:  5'- aGCCgaaGGCGAcGGCGCUGUuuGcGUUUUUGu -3'
miRNA:   3'- -CGG---CCGCU-UUGCGGCAggC-CGAAAAC- -5'
6753 3' -55 NC_001875.2 + 30027 0.67 0.893168
Target:  5'- cGCCGGauCGAccguaAACGCCGgccaauugcuugCCGGCcgUUUGc -3'
miRNA:   3'- -CGGCC--GCU-----UUGCGGCa-----------GGCCGa-AAAC- -5'
6753 3' -55 NC_001875.2 + 31687 0.72 0.617197
Target:  5'- uGCCGGCGuggaccgccgcuugcGCGCCG-CCGGCg---- -3'
miRNA:   3'- -CGGCCGCuu-------------UGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 31960 0.71 0.70958
Target:  5'- uGCCGGCGAcgacgaacgcguguGGCGCgCGUacggCCGGUUUgUGa -3'
miRNA:   3'- -CGGCCGCU--------------UUGCG-GCA----GGCCGAAaAC- -5'
6753 3' -55 NC_001875.2 + 32443 0.67 0.887725
Target:  5'- cGCUGcGCGAcccgcuGGCGCCG-CCGGUg---- -3'
miRNA:   3'- -CGGC-CGCU------UUGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 32784 0.71 0.682134
Target:  5'- cGCgCGGCGugggcGGGCGCCGcgCCGGCa---- -3'
miRNA:   3'- -CG-GCCGC-----UUUGCGGCa-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 33037 0.66 0.913434
Target:  5'- aGCgCGGCG-GGCGCCGcgCCGcGCg---- -3'
miRNA:   3'- -CG-GCCGCuUUGCGGCa-GGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 33091 0.71 0.712603
Target:  5'- -aUGGCG--GCGCCGUCgCGGCUg--- -3'
miRNA:   3'- cgGCCGCuuUGCGGCAG-GCCGAaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.