miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 3' -55 NC_001875.2 + 98155 0.68 0.825651
Target:  5'- aGCgGGCG--GCGCaCGUCgGGCcgUUUGu -3'
miRNA:   3'- -CGgCCGCuuUGCG-GCAGgCCGa-AAAC- -5'
6753 3' -55 NC_001875.2 + 70231 0.71 0.712603
Target:  5'- cGCCGacacagccCGAAGCGCCG-CCGGCg---- -3'
miRNA:   3'- -CGGCc-------GCUUUGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 17329 0.7 0.732583
Target:  5'- uGCUGGCGGuuGCGCCG-CCGcGCg---- -3'
miRNA:   3'- -CGGCCGCUu-UGCGGCaGGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 110756 0.69 0.790088
Target:  5'- aGCgCGGCGAc-CGCCG-CCGcgcGCUUUUGc -3'
miRNA:   3'- -CG-GCCGCUuuGCGGCaGGC---CGAAAAC- -5'
6753 3' -55 NC_001875.2 + 117346 0.69 0.790088
Target:  5'- cGCgGGCGAAcCGgCGggCCGGCUg--- -3'
miRNA:   3'- -CGgCCGCUUuGCgGCa-GGCCGAaaac -5'
6753 3' -55 NC_001875.2 + 117373 0.69 0.799218
Target:  5'- cGUCGGgGAGGCGCCGagcuugCUGGCc---- -3'
miRNA:   3'- -CGGCCgCUUUGCGGCa-----GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 54013 0.69 0.799218
Target:  5'- gGCCuuGGCGgcGCGCgCGUaCCGGCa---- -3'
miRNA:   3'- -CGG--CCGCuuUGCG-GCA-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 8254 0.69 0.817008
Target:  5'- aGCCGGCGAAucuugugccCGCCGU-UGGCa---- -3'
miRNA:   3'- -CGGCCGCUUu--------GCGGCAgGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 29951 0.69 0.817008
Target:  5'- aGCCgaaGGCGAcGGCGCUGUuuGcGUUUUUGu -3'
miRNA:   3'- -CGG---CCGCU-UUGCGGCAggC-CGAAAAC- -5'
6753 3' -55 NC_001875.2 + 31960 0.71 0.70958
Target:  5'- uGCCGGCGAcgacgaacgcguguGGCGCgCGUacggCCGGUUUgUGa -3'
miRNA:   3'- -CGGCCGCU--------------UUGCG-GCA----GGCCGAAaAC- -5'
6753 3' -55 NC_001875.2 + 32784 0.71 0.682134
Target:  5'- cGCgCGGCGugggcGGGCGCCGcgCCGGCa---- -3'
miRNA:   3'- -CG-GCCGC-----UUUGCGGCa-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 49858 0.71 0.671881
Target:  5'- cGCCGGcCGgcGCGCCuugCCGGCg---- -3'
miRNA:   3'- -CGGCC-GCuuUGCGGca-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 29282 0.78 0.340934
Target:  5'- cGCCGGCGggGCGCgGUCgugUGGCg--UGu -3'
miRNA:   3'- -CGGCCGCuuUGCGgCAG---GCCGaaaAC- -5'
6753 3' -55 NC_001875.2 + 37112 0.77 0.364656
Target:  5'- uGCgGGCGcgGCGCCGcgCCGGCgUUUGc -3'
miRNA:   3'- -CGgCCGCuuUGCGGCa-GGCCGaAAAC- -5'
6753 3' -55 NC_001875.2 + 111880 0.74 0.50883
Target:  5'- -aCGGCGAGGCGCCGgCCGGaccgUGc -3'
miRNA:   3'- cgGCCGCUUUGCGGCaGGCCgaaaAC- -5'
6753 3' -55 NC_001875.2 + 36422 0.74 0.538592
Target:  5'- gGCCGGCGccGCGgUGUCgGGCUggUGc -3'
miRNA:   3'- -CGGCCGCuuUGCgGCAGgCCGAaaAC- -5'
6753 3' -55 NC_001875.2 + 31687 0.72 0.617197
Target:  5'- uGCCGGCGuggaccgccgcuugcGCGCCG-CCGGCg---- -3'
miRNA:   3'- -CGGCCGCuu-------------UGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 4460 0.72 0.620295
Target:  5'- gGCCaGGCucuGAGCGCCGUCCGcGCa---- -3'
miRNA:   3'- -CGG-CCGc--UUUGCGGCAGGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 117938 0.72 0.620295
Target:  5'- gGCCGGCGugcGCGCCG-CCGcGUUuggUUUGg -3'
miRNA:   3'- -CGGCCGCuu-UGCGGCaGGC-CGA---AAAC- -5'
6753 3' -55 NC_001875.2 + 79125 0.71 0.671881
Target:  5'- uGUCGGCGGcgGGCGCCGcggCgGGCUcgUUUGc -3'
miRNA:   3'- -CGGCCGCU--UUGCGGCa--GgCCGA--AAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.