miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 3' -55 NC_001875.2 + 104508 1.1 0.002967
Target:  5'- aGCCGGCGAAACGCCGUCCGGCUUUUGc -3'
miRNA:   3'- -CGGCCGCUUUGCGGCAGGCCGAAAAC- -5'
6753 3' -55 NC_001875.2 + 37585 0.8 0.251277
Target:  5'- cGCCGGCGcGAGCGCCGcggCCGGCc---- -3'
miRNA:   3'- -CGGCCGC-UUUGCGGCa--GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 29282 0.78 0.340934
Target:  5'- cGCCGGCGggGCGCgGUCgugUGGCg--UGu -3'
miRNA:   3'- -CGGCCGCuuUGCGgCAG---GCCGaaaAC- -5'
6753 3' -55 NC_001875.2 + 37112 0.77 0.364656
Target:  5'- uGCgGGCGcgGCGCCGcgCCGGCgUUUGc -3'
miRNA:   3'- -CGgCCGCuuUGCGGCa-GGCCGaAAAC- -5'
6753 3' -55 NC_001875.2 + 81983 0.74 0.50883
Target:  5'- cGCCGGCaaGgcGCGCCGgCCGGCg---- -3'
miRNA:   3'- -CGGCCG--CuuUGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 111880 0.74 0.50883
Target:  5'- -aCGGCGAGGCGCCGgCCGGaccgUGc -3'
miRNA:   3'- cgGCCGCUUUGCGGCaGGCCgaaaAC- -5'
6753 3' -55 NC_001875.2 + 83589 0.74 0.518677
Target:  5'- cCCGGCGggGCGCCG-CCGuaGCUc--- -3'
miRNA:   3'- cGGCCGCuuUGCGGCaGGC--CGAaaac -5'
6753 3' -55 NC_001875.2 + 36422 0.74 0.538592
Target:  5'- gGCCGGCGccGCGgUGUCgGGCUggUGc -3'
miRNA:   3'- -CGGCCGCuuUGCgGCAGgCCGAaaAC- -5'
6753 3' -55 NC_001875.2 + 77101 0.73 0.568926
Target:  5'- uGCCGGCGguGCGCCcgcaCGGCUa--- -3'
miRNA:   3'- -CGGCCGCuuUGCGGcag-GCCGAaaac -5'
6753 3' -55 NC_001875.2 + 40225 0.73 0.599667
Target:  5'- cGCCGGCGAAACGCgCGUguuuagCGuGCUgUUGa -3'
miRNA:   3'- -CGGCCGCUUUGCG-GCAg-----GC-CGAaAAC- -5'
6753 3' -55 NC_001875.2 + 94232 0.72 0.609973
Target:  5'- cGUCGGCGAGcACGCCG-CCGuGCg---- -3'
miRNA:   3'- -CGGCCGCUU-UGCGGCaGGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 31687 0.72 0.617197
Target:  5'- uGCCGGCGuggaccgccgcuugcGCGCCG-CCGGCg---- -3'
miRNA:   3'- -CGGCCGCuu-------------UGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 117938 0.72 0.620295
Target:  5'- gGCCGGCGugcGCGCCG-CCGcGUUuggUUUGg -3'
miRNA:   3'- -CGGCCGCuu-UGCGGCaGGC-CGA---AAAC- -5'
6753 3' -55 NC_001875.2 + 4460 0.72 0.620295
Target:  5'- gGCCaGGCucuGAGCGCCGUCCGcGCa---- -3'
miRNA:   3'- -CGG-CCGc--UUUGCGGCAGGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 128019 0.72 0.620295
Target:  5'- cGCCGGCGu-GCGCCGacgacggCCGGUg---- -3'
miRNA:   3'- -CGGCCGCuuUGCGGCa------GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 81812 0.72 0.620295
Target:  5'- gGCCGGCcgccuCGCCGcCCGGCg---- -3'
miRNA:   3'- -CGGCCGcuuu-GCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 19951 0.72 0.640959
Target:  5'- gGCCGGCGcGACGguCCGgCCGGCg---- -3'
miRNA:   3'- -CGGCCGCuUUGC--GGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 77269 0.72 0.651285
Target:  5'- cGCCgGGCGAAGCgGCCGcCgCGGCg---- -3'
miRNA:   3'- -CGG-CCGCUUUG-CGGCaG-GCCGaaaac -5'
6753 3' -55 NC_001875.2 + 127323 0.72 0.651285
Target:  5'- aGCCGGCGguGCGCCGcuuUCCGcaGCg---- -3'
miRNA:   3'- -CGGCCGCuuUGCGGC---AGGC--CGaaaac -5'
6753 3' -55 NC_001875.2 + 38059 0.72 0.661595
Target:  5'- cCCGcGCGAcuuGCGCCGUaaaCGGCUUg-- -3'
miRNA:   3'- cGGC-CGCUu--UGCGGCAg--GCCGAAaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.