miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 3' -55 NC_001875.2 + 46162 0.65 0.935288
Target:  5'- aGCUGGuCGAGuCGCUGcaggCCGGCg---- -3'
miRNA:   3'- -CGGCC-GCUUuGCGGCa---GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 39668 0.65 0.935288
Target:  5'- gGCCGGCGgcGCGCgG--CGGCg---- -3'
miRNA:   3'- -CGGCCGCuuUGCGgCagGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 37640 0.65 0.935288
Target:  5'- gGCuCGGCaAGACGCUGUCCGucauGCg---- -3'
miRNA:   3'- -CG-GCCGcUUUGCGGCAGGC----CGaaaac -5'
6753 3' -55 NC_001875.2 + 18246 0.66 0.913434
Target:  5'- cGCCGcCGAcucgAACGCCGUgCUGGCc---- -3'
miRNA:   3'- -CGGCcGCU----UUGCGGCA-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 109845 0.66 0.930189
Target:  5'- uGCCGGCGGAuuugcuGCGCgCGUuugccaagCUGGCg---- -3'
miRNA:   3'- -CGGCCGCUU------UGCG-GCA--------GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 7449 0.66 0.930189
Target:  5'- cGCCGGCGAuuGCGgCGguguaCGGCc---- -3'
miRNA:   3'- -CGGCCGCUu-UGCgGCag---GCCGaaaac -5'
6753 3' -55 NC_001875.2 + 61606 0.66 0.907363
Target:  5'- cGCCGGCG--GCGCU-UCgGGCUg--- -3'
miRNA:   3'- -CGGCCGCuuUGCGGcAGgCCGAaaac -5'
6753 3' -55 NC_001875.2 + 126326 0.66 0.924848
Target:  5'- gGCCGGCGuaaacuGCGCgCGUgcgCCGGUc---- -3'
miRNA:   3'- -CGGCCGCuu----UGCG-GCA---GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 33037 0.66 0.913434
Target:  5'- aGCgCGGCG-GGCGCCGcgCCGcGCg---- -3'
miRNA:   3'- -CG-GCCGCuUUGCGGCa-GGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 129161 0.66 0.906743
Target:  5'- uGCCgaGGCGccgcaguugccccAGGCGCCG-CCGGCg---- -3'
miRNA:   3'- -CGG--CCGC-------------UUUGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 81436 0.66 0.907363
Target:  5'- aGCUGGcCGucuGCGCCGUCCG-Ca---- -3'
miRNA:   3'- -CGGCC-GCuu-UGCGGCAGGCcGaaaac -5'
6753 3' -55 NC_001875.2 + 49640 0.66 0.924848
Target:  5'- -gCGGCGAcacgAGCgGCCG-CCGGCg---- -3'
miRNA:   3'- cgGCCGCU----UUG-CGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 41806 0.66 0.913434
Target:  5'- cGCCGGC---ACGCgCG-CCGGCg---- -3'
miRNA:   3'- -CGGCCGcuuUGCG-GCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 108580 0.66 0.907363
Target:  5'- uGCUGGCGcuGCGCUGcCCGucGCUg--- -3'
miRNA:   3'- -CGGCCGCuuUGCGGCaGGC--CGAaaac -5'
6753 3' -55 NC_001875.2 + 33221 0.66 0.907363
Target:  5'- cGCgGGCGcgggcucgccGGGCGCCGuUUCGGCg---- -3'
miRNA:   3'- -CGgCCGC----------UUUGCGGC-AGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 5133 0.66 0.907363
Target:  5'- cGUCcGCGGAcguGCGCCGcuUCgGGUUUUUGa -3'
miRNA:   3'- -CGGcCGCUU---UGCGGC--AGgCCGAAAAC- -5'
6753 3' -55 NC_001875.2 + 75596 0.66 0.924848
Target:  5'- cGUCGGCGAuGGCGUCGgcgUUGGCgucggcgUUGg -3'
miRNA:   3'- -CGGCCGCU-UUGCGGCa--GGCCGaa-----AAC- -5'
6753 3' -55 NC_001875.2 + 38302 0.66 0.913434
Target:  5'- cGgUGGCG-AGCGCCGacaaggCCGGCg---- -3'
miRNA:   3'- -CgGCCGCuUUGCGGCa-----GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 81339 0.66 0.924848
Target:  5'- uGCCGcGCGgcGCGCUGgugCCGcGCg---- -3'
miRNA:   3'- -CGGC-CGCuuUGCGGCa--GGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 59627 0.66 0.907363
Target:  5'- aUUGGCG-GACGCCGcgucgCUGGCUcgUGg -3'
miRNA:   3'- cGGCCGCuUUGCGGCa----GGCCGAaaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.