miRNA display CGI


Results 1 - 20 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 3' -55 NC_001875.2 + 130676 0.67 0.901053
Target:  5'- uGCC-GCGAcGACGCC-UCUGGCUg--- -3'
miRNA:   3'- -CGGcCGCU-UUGCGGcAGGCCGAaaac -5'
6753 3' -55 NC_001875.2 + 130288 0.68 0.866022
Target:  5'- cGCCGGCGGuuGCGUgGUUugCGGCa---- -3'
miRNA:   3'- -CGGCCGCUu-UGCGgCAG--GCCGaaaac -5'
6753 3' -55 NC_001875.2 + 129161 0.66 0.906743
Target:  5'- uGCCgaGGCGccgcaguugccccAGGCGCCG-CCGGCg---- -3'
miRNA:   3'- -CGG--CCGC-------------UUUGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 128755 0.67 0.880714
Target:  5'- cCCGGCGcgugcACGCCGUgggcgaccCCGGCg---- -3'
miRNA:   3'- cGGCCGCuu---UGCGGCA--------GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 128506 0.68 0.850471
Target:  5'- aCCGGacaCGAGGCGcCCGUCCcGCUUa-- -3'
miRNA:   3'- cGGCC---GCUUUGC-GGCAGGcCGAAaac -5'
6753 3' -55 NC_001875.2 + 128019 0.72 0.620295
Target:  5'- cGCCGGCGu-GCGCCGacgacggCCGGUg---- -3'
miRNA:   3'- -CGGCCGCuuUGCGGCa------GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 127323 0.72 0.651285
Target:  5'- aGCCGGCGguGCGCCGcuuUCCGcaGCg---- -3'
miRNA:   3'- -CGGCCGCuuUGCGGC---AGGC--CGaaaac -5'
6753 3' -55 NC_001875.2 + 127043 0.67 0.887725
Target:  5'- aGCUGGCGAcAgGgCG-CCGGCUg--- -3'
miRNA:   3'- -CGGCCGCUuUgCgGCaGGCCGAaaac -5'
6753 3' -55 NC_001875.2 + 126326 0.66 0.924848
Target:  5'- gGCCGGCGuaaacuGCGCgCGUgcgCCGGUc---- -3'
miRNA:   3'- -CGGCCGCuu----UGCG-GCA---GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 121984 0.67 0.878567
Target:  5'- aGCUGGCGGGcACGuuGcCCGccagcgaaaugagcGCUUUUGg -3'
miRNA:   3'- -CGGCCGCUU-UGCggCaGGC--------------CGAAAAC- -5'
6753 3' -55 NC_001875.2 + 117938 0.72 0.620295
Target:  5'- gGCCGGCGugcGCGCCG-CCGcGUUuggUUUGg -3'
miRNA:   3'- -CGGCCGCuu-UGCGGCaGGC-CGA---AAAC- -5'
6753 3' -55 NC_001875.2 + 117373 0.69 0.799218
Target:  5'- cGUCGGgGAGGCGCCGagcuugCUGGCc---- -3'
miRNA:   3'- -CGGCCgCUUUGCGGCa-----GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 117346 0.69 0.790088
Target:  5'- cGCgGGCGAAcCGgCGggCCGGCUg--- -3'
miRNA:   3'- -CGgCCGCUUuGCgGCa-GGCCGAaaac -5'
6753 3' -55 NC_001875.2 + 114983 0.67 0.901053
Target:  5'- cGCUGGCG--GCGCCGauuaacaCGGCUa--- -3'
miRNA:   3'- -CGGCCGCuuUGCGGCag-----GCCGAaaac -5'
6753 3' -55 NC_001875.2 + 113158 0.71 0.702504
Target:  5'- cGCCGGCGcgcGCGCCGUUugauaUGGCa---- -3'
miRNA:   3'- -CGGCCGCuu-UGCGGCAG-----GCCGaaaac -5'
6753 3' -55 NC_001875.2 + 111880 0.74 0.50883
Target:  5'- -aCGGCGAGGCGCCGgCCGGaccgUGc -3'
miRNA:   3'- cgGCCGCUUUGCGGCaGGCCgaaaAC- -5'
6753 3' -55 NC_001875.2 + 111333 0.71 0.702504
Target:  5'- uGCUGGUGGcgGGCGCCacUCCGGUUUUg- -3'
miRNA:   3'- -CGGCCGCU--UUGCGGc-AGGCCGAAAac -5'
6753 3' -55 NC_001875.2 + 110756 0.69 0.790088
Target:  5'- aGCgCGGCGAc-CGCCG-CCGcgcGCUUUUGc -3'
miRNA:   3'- -CG-GCCGCUuuGCGGCaGGC---CGAAAAC- -5'
6753 3' -55 NC_001875.2 + 110175 0.67 0.887725
Target:  5'- gGgCGGCGucgcacuGCGCuCGUCCGcGCUggcgUUUGg -3'
miRNA:   3'- -CgGCCGCuu-----UGCG-GCAGGC-CGA----AAAC- -5'
6753 3' -55 NC_001875.2 + 109845 0.66 0.930189
Target:  5'- uGCCGGCGGAuuugcuGCGCgCGUuugccaagCUGGCg---- -3'
miRNA:   3'- -CGGCCGCUU------UGCG-GCA--------GGCCGaaaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.