miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 3' -55 NC_001875.2 + 97965 0.67 0.880714
Target:  5'- gGCCacCGAAACGCCGUucugCCGGCc---- -3'
miRNA:   3'- -CGGccGCUUUGCGGCA----GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 47459 0.67 0.880714
Target:  5'- uCCGGCuaccGACGCCGccCCGGCa---- -3'
miRNA:   3'- cGGCCGcu--UUGCGGCa-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 121984 0.67 0.878567
Target:  5'- aGCUGGCGGGcACGuuGcCCGccagcgaaaugagcGCUUUUGg -3'
miRNA:   3'- -CGGCCGCUU-UGCggCaGGC--------------CGAAAAC- -5'
6753 3' -55 NC_001875.2 + 75632 0.67 0.873478
Target:  5'- cGUCGGCGuuGGCGUCGgcgUCGGCgauggcgUUGg -3'
miRNA:   3'- -CGGCCGCu-UUGCGGCa--GGCCGaa-----AAC- -5'
6753 3' -55 NC_001875.2 + 130288 0.68 0.866022
Target:  5'- cGCCGGCGGuuGCGUgGUUugCGGCa---- -3'
miRNA:   3'- -CGGCCGCUu-UGCGgCAG--GCCGaaaac -5'
6753 3' -55 NC_001875.2 + 101653 0.68 0.866022
Target:  5'- -gCGGCGAAcgGCGCCaaaUCaCGGCUUUc- -3'
miRNA:   3'- cgGCCGCUU--UGCGGc--AG-GCCGAAAac -5'
6753 3' -55 NC_001875.2 + 79115 0.68 0.866022
Target:  5'- uGCUGGCGAucCGCCGaUCGucGUUUUUGu -3'
miRNA:   3'- -CGGCCGCUuuGCGGCaGGC--CGAAAAC- -5'
6753 3' -55 NC_001875.2 + 84341 0.68 0.858351
Target:  5'- -gCGGCGAGugGCgGagCGGCUg--- -3'
miRNA:   3'- cgGCCGCUUugCGgCagGCCGAaaac -5'
6753 3' -55 NC_001875.2 + 83003 0.68 0.858351
Target:  5'- cGCCGGCGGgcuugaagcGGCGCCGUagCGcGCg---- -3'
miRNA:   3'- -CGGCCGCU---------UUGCGGCAg-GC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 67893 0.68 0.850471
Target:  5'- gGUCGGCGAcAGCGCCuUCCucGGCa---- -3'
miRNA:   3'- -CGGCCGCU-UUGCGGcAGG--CCGaaaac -5'
6753 3' -55 NC_001875.2 + 51544 0.68 0.850471
Target:  5'- cGCUGGCGAAcACGCCGa-CGcGCUUg-- -3'
miRNA:   3'- -CGGCCGCUU-UGCGGCagGC-CGAAaac -5'
6753 3' -55 NC_001875.2 + 57547 0.68 0.850471
Target:  5'- cGCCguaGGCGAuGCGCUGUUCGcGCg---- -3'
miRNA:   3'- -CGG---CCGCUuUGCGGCAGGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 69444 0.68 0.850471
Target:  5'- cGCCGGCGuuuGCGCg--CCGGCc---- -3'
miRNA:   3'- -CGGCCGCuu-UGCGgcaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 61503 0.68 0.850471
Target:  5'- cGCCGGCucGGCGCCGcagUCCGcGUg---- -3'
miRNA:   3'- -CGGCCGcuUUGCGGC---AGGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 128506 0.68 0.850471
Target:  5'- aCCGGacaCGAGGCGcCCGUCCcGCUUa-- -3'
miRNA:   3'- cGGCC---GCUUUGC-GGCAGGcCGAAaac -5'
6753 3' -55 NC_001875.2 + 94255 0.68 0.834114
Target:  5'- gGCCGGcCGcgGCGCuCGcgCCGGCg---- -3'
miRNA:   3'- -CGGCC-GCuuUGCG-GCa-GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 2542 0.68 0.834114
Target:  5'- gGCCGGUGAacAACgGCgCGUCgGGCg---- -3'
miRNA:   3'- -CGGCCGCU--UUG-CG-GCAGgCCGaaaac -5'
6753 3' -55 NC_001875.2 + 9047 0.68 0.834114
Target:  5'- cGCCGGCc--GCGCCGguuuccgcgCCGGUUUc-- -3'
miRNA:   3'- -CGGCCGcuuUGCGGCa--------GGCCGAAaac -5'
6753 3' -55 NC_001875.2 + 88977 0.68 0.834114
Target:  5'- cGCUGGCGGAccuGCGCC-UgCGGCg---- -3'
miRNA:   3'- -CGGCCGCUU---UGCGGcAgGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 43790 0.68 0.834114
Target:  5'- uGCUGGCGAcaaacuugAGCGuuGgcaCGGCUUUg- -3'
miRNA:   3'- -CGGCCGCU--------UUGCggCag-GCCGAAAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.