miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 3' -55 NC_001875.2 + 81436 0.66 0.907363
Target:  5'- aGCUGGcCGucuGCGCCGUCCG-Ca---- -3'
miRNA:   3'- -CGGCC-GCuu-UGCGGCAGGCcGaaaac -5'
6753 3' -55 NC_001875.2 + 5133 0.66 0.907363
Target:  5'- cGUCcGCGGAcguGCGCCGcuUCgGGUUUUUGa -3'
miRNA:   3'- -CGGcCGCUU---UGCGGC--AGgCCGAAAAC- -5'
6753 3' -55 NC_001875.2 + 33221 0.66 0.907363
Target:  5'- cGCgGGCGcgggcucgccGGGCGCCGuUUCGGCg---- -3'
miRNA:   3'- -CGgCCGC----------UUUGCGGC-AGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 108580 0.66 0.907363
Target:  5'- uGCUGGCGcuGCGCUGcCCGucGCUg--- -3'
miRNA:   3'- -CGGCCGCuuUGCGGCaGGC--CGAaaac -5'
6753 3' -55 NC_001875.2 + 129161 0.66 0.906743
Target:  5'- uGCCgaGGCGccgcaguugccccAGGCGCCG-CCGGCg---- -3'
miRNA:   3'- -CGG--CCGC-------------UUUGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 98785 0.67 0.901053
Target:  5'- aGCCGcGCGGAACGCUaUCgcgCGGCg---- -3'
miRNA:   3'- -CGGC-CGCUUUGCGGcAG---GCCGaaaac -5'
6753 3' -55 NC_001875.2 + 130676 0.67 0.901053
Target:  5'- uGCC-GCGAcGACGCC-UCUGGCUg--- -3'
miRNA:   3'- -CGGcCGCU-UUGCGGcAGGCCGAaaac -5'
6753 3' -55 NC_001875.2 + 114983 0.67 0.901053
Target:  5'- cGCUGGCG--GCGCCGauuaacaCGGCUa--- -3'
miRNA:   3'- -CGGCCGCuuUGCGGCag-----GCCGAaaac -5'
6753 3' -55 NC_001875.2 + 82055 0.67 0.901053
Target:  5'- gGCUGaGCGGAAUGCUGgCCgggGGCUUUg- -3'
miRNA:   3'- -CGGC-CGCUUUGCGGCaGG---CCGAAAac -5'
6753 3' -55 NC_001875.2 + 8477 0.67 0.900409
Target:  5'- cGUCGcGCGGAaacaccacgccggGCGCCGUCCGuGUg---- -3'
miRNA:   3'- -CGGC-CGCUU-------------UGCGGCAGGC-CGaaaac -5'
6753 3' -55 NC_001875.2 + 109090 0.67 0.898462
Target:  5'- uGCCGGUGAugUGCUGgagcggugcguggCCGGCg---- -3'
miRNA:   3'- -CGGCCGCUuuGCGGCa------------GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 68800 0.67 0.897153
Target:  5'- uGCCGGCGAAcaccugcaccaucccACGCUGUauuugcgcugcCUGGCg---- -3'
miRNA:   3'- -CGGCCGCUU---------------UGCGGCA-----------GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 54590 0.67 0.894506
Target:  5'- cCCGGCGgcGCGCCca-CGGCg---- -3'
miRNA:   3'- cGGCCGCuuUGCGGcagGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 30027 0.67 0.893168
Target:  5'- cGCCGGauCGAccguaAACGCCGgccaauugcuugCCGGCcgUUUGc -3'
miRNA:   3'- -CGGCC--GCU-----UUGCGGCa-----------GGCCGa-AAAC- -5'
6753 3' -55 NC_001875.2 + 86905 0.67 0.892496
Target:  5'- cGCCGGCGAAaacgaggcgcugaaGCGCCG-CCuagagugcgagGGCg---- -3'
miRNA:   3'- -CGGCCGCUU--------------UGCGGCaGG-----------CCGaaaac -5'
6753 3' -55 NC_001875.2 + 110175 0.67 0.887725
Target:  5'- gGgCGGCGucgcacuGCGCuCGUCCGcGCUggcgUUUGg -3'
miRNA:   3'- -CgGCCGCuu-----UGCG-GCAGGC-CGA----AAAC- -5'
6753 3' -55 NC_001875.2 + 32443 0.67 0.887725
Target:  5'- cGCUGcGCGAcccgcuGGCGCCG-CCGGUg---- -3'
miRNA:   3'- -CGGC-CGCU------UUGCGGCaGGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 127043 0.67 0.887725
Target:  5'- aGCUGGCGAcAgGgCG-CCGGCUg--- -3'
miRNA:   3'- -CGGCCGCUuUgCgGCaGGCCGAaaac -5'
6753 3' -55 NC_001875.2 + 75674 0.67 0.887034
Target:  5'- cGUCGGCGAuggcguuGGCGUCGgcgUCGGCg---- -3'
miRNA:   3'- -CGGCCGCU-------UUGCGGCa--GGCCGaaaac -5'
6753 3' -55 NC_001875.2 + 128755 0.67 0.880714
Target:  5'- cCCGGCGcgugcACGCCGUgggcgaccCCGGCg---- -3'
miRNA:   3'- cGGCCGCuu---UGCGGCA--------GGCCGaaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.