miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 125857 0.66 0.941281
Target:  5'- cGGCAcGCGcuGGgccugcccGUCGGCGACCACa -3'
miRNA:   3'- -CCGU-UGUuuCUac------CGGCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 58509 0.66 0.940809
Target:  5'- gGGC-ACAAAGAaaggGGCguaaagcgcauucUGGUGcCCACCa -3'
miRNA:   3'- -CCGuUGUUUCUa---CCG-------------GCCGCuGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 66119 0.66 0.939856
Target:  5'- gGGCGGCGAGGcgGcGCCgcccgcggaacaguGGuCGGCCGgCg -3'
miRNA:   3'- -CCGUUGUUUCuaC-CGG--------------CC-GCUGGUgG- -5'
6753 5' -53.9 NC_001875.2 + 131756 0.66 0.938409
Target:  5'- cGGCGGCGGAucgGGCgGcGCGucauuggugucguucGCCGCCg -3'
miRNA:   3'- -CCGUUGUUUcuaCCGgC-CGC---------------UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 82926 0.66 0.936446
Target:  5'- uGCGACGGAGAUGcuGCCGgGCG-CgACg -3'
miRNA:   3'- cCGUUGUUUCUAC--CGGC-CGCuGgUGg -5'
6753 5' -53.9 NC_001875.2 + 35499 0.66 0.936446
Target:  5'- cGGCAugACAAcuGccGGCaacgGGCGGCCGCg -3'
miRNA:   3'- -CCGU--UGUUu-CuaCCGg---CCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 20036 0.66 0.936446
Target:  5'- aGCAGCcAGGcgccgucGGCCGcGUGcACCGCCg -3'
miRNA:   3'- cCGUUGuUUCua-----CCGGC-CGC-UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 123973 0.66 0.936446
Target:  5'- cGGCGcuuguucucGCAAAGAauacGGCUGcauguugcgcGCGACCACg -3'
miRNA:   3'- -CCGU---------UGUUUCUa---CCGGC----------CGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 75455 0.66 0.936446
Target:  5'- cGGCGuuGGuGAUGGCguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUugUUuCUACCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 109104 0.66 0.936446
Target:  5'- uGG-AGCGGugcGUGGCCGGCGcacaaguagGCCACa -3'
miRNA:   3'- -CCgUUGUUuc-UACCGGCCGC---------UGGUGg -5'
6753 5' -53.9 NC_001875.2 + 33144 0.66 0.936446
Target:  5'- uGGCGGCAGGGcaacaGCaCGGCGucgcGCUGCCg -3'
miRNA:   3'- -CCGUUGUUUCuac--CG-GCCGC----UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 33520 0.66 0.936446
Target:  5'- cGCAGCGcGGcuuGCCgGGCGAaaCCACCa -3'
miRNA:   3'- cCGUUGUuUCuacCGG-CCGCU--GGUGG- -5'
6753 5' -53.9 NC_001875.2 + 75425 0.66 0.936446
Target:  5'- cGGCGuuGGuGAUGGCguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUugUUuCUACCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 68041 0.66 0.936446
Target:  5'- cGCGcCAAAGc-GGUuuGCGGCCACCa -3'
miRNA:   3'- cCGUuGUUUCuaCCGgcCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 75305 0.66 0.936446
Target:  5'- cGGCGuuGGuGAUGGCguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUugUUuCUACCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 82048 0.66 0.935948
Target:  5'- cGCGGCGGgcugagcGGAaugcUGGCCGGgGGCUuugcgGCCu -3'
miRNA:   3'- cCGUUGUU-------UCU----ACCGGCCgCUGG-----UGG- -5'
6753 5' -53.9 NC_001875.2 + 7101 0.67 0.931364
Target:  5'- uGCAGCGcgcGcUGGCCGacauUGACCGCCa -3'
miRNA:   3'- cCGUUGUuu-CuACCGGCc---GCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 81784 0.67 0.931364
Target:  5'- cGCGACGAcaugucuucAGAcagcgacgGGCCGGCcgccucGCCGCCc -3'
miRNA:   3'- cCGUUGUU---------UCUa-------CCGGCCGc-----UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 111876 0.67 0.931364
Target:  5'- aGCAACGgcGAGGcgccGGCCGGaccgugcgcgcCGGCCGCUc -3'
miRNA:   3'- cCGUUGU--UUCUa---CCGGCC-----------GCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 102911 0.67 0.931364
Target:  5'- cGGCcguugaAGCGGAGGUGGCgGaUGACCGgCu -3'
miRNA:   3'- -CCG------UUGUUUCUACCGgCcGCUGGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.