miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 46004 0.66 0.95022
Target:  5'- -aCAACAgcAGGAUcGGCCGcccacgcaGCuGGCCGCCg -3'
miRNA:   3'- ccGUUGU--UUCUA-CCGGC--------CG-CUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 114493 0.66 0.95022
Target:  5'- cGGCAGCAcucuGAcgcGGUCGcGCGgcggcgcaACCGCCa -3'
miRNA:   3'- -CCGUUGUuu--CUa--CCGGC-CGC--------UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 108189 0.66 0.95022
Target:  5'- cGCGAUGAccugGGCCucGGCGAgCACCc -3'
miRNA:   3'- cCGUUGUUucuaCCGG--CCGCUgGUGG- -5'
6753 5' -53.9 NC_001875.2 + 90823 0.66 0.95022
Target:  5'- cGGCcACGc----GGuuGGCGACCugCu -3'
miRNA:   3'- -CCGuUGUuucuaCCggCCGCUGGugG- -5'
6753 5' -53.9 NC_001875.2 + 75377 0.66 0.95022
Target:  5'- uGGCGuuGGuGAUGGCguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUugUUuCUACCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 96247 0.66 0.95022
Target:  5'- --aAACGuAAGAUGGCgccaucaaaaUGGCGGCCAUg -3'
miRNA:   3'- ccgUUGU-UUCUACCG----------GCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 91367 0.66 0.95022
Target:  5'- cGCGACAu-GAcGcCCGGC-ACCACCa -3'
miRNA:   3'- cCGUUGUuuCUaCcGGCCGcUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 48425 0.66 0.95022
Target:  5'- cGGCAGCGcgcaguuuuGcgGcGCCauGGCGACCaACCc -3'
miRNA:   3'- -CCGUUGUuu-------CuaC-CGG--CCGCUGG-UGG- -5'
6753 5' -53.9 NC_001875.2 + 88833 0.66 0.95022
Target:  5'- cGGCAcucGCAAuGGA-GGCCaccuucgcaacGGCcGCCGCCu -3'
miRNA:   3'- -CCGU---UGUU-UCUaCCGG-----------CCGcUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 104479 0.66 0.94764
Target:  5'- cGCAACGugcuGGUGagccgcaugaugcgaGCCGGCGAaaCGCCg -3'
miRNA:   3'- cCGUUGUuu--CUAC---------------CGGCCGCUg-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 12712 0.66 0.945872
Target:  5'- gGGCGACAAAGu--GC--GCGGCCAUCu -3'
miRNA:   3'- -CCGUUGUUUCuacCGgcCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 115423 0.66 0.945872
Target:  5'- uGGcCAACGAAcGGuuUGG-CGGCGACgaaCACCg -3'
miRNA:   3'- -CC-GUUGUUU-CU--ACCgGCCGCUG---GUGG- -5'
6753 5' -53.9 NC_001875.2 + 63847 0.66 0.945872
Target:  5'- gGGaCGACAuaAAGGUGuCCGGCG-CCugUu -3'
miRNA:   3'- -CC-GUUGU--UUCUACcGGCCGCuGGugG- -5'
6753 5' -53.9 NC_001875.2 + 119552 0.66 0.945872
Target:  5'- cGGCGGCGu-GccGGCugcacaCGGUGGCCugCa -3'
miRNA:   3'- -CCGUUGUuuCuaCCG------GCCGCUGGugG- -5'
6753 5' -53.9 NC_001875.2 + 20751 0.66 0.945424
Target:  5'- cGCAACaAAAGGUuuucacgGcGCCGGCGucguCCACg -3'
miRNA:   3'- cCGUUG-UUUCUA-------C-CGGCCGCu---GGUGg -5'
6753 5' -53.9 NC_001875.2 + 7268 0.66 0.941281
Target:  5'- aGCAggaGCAAAcGGUGuGCCGccaaaGCGACCccGCCg -3'
miRNA:   3'- cCGU---UGUUU-CUAC-CGGC-----CGCUGG--UGG- -5'
6753 5' -53.9 NC_001875.2 + 53453 0.66 0.941281
Target:  5'- uGCAGCAcuGcgGGUCgcucggcuuGGCGAUCACUc -3'
miRNA:   3'- cCGUUGUuuCuaCCGG---------CCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 89813 0.66 0.941281
Target:  5'- gGGCGGCAGAucguGGU-GCCGGUuaacgGGCCcGCCg -3'
miRNA:   3'- -CCGUUGUUU----CUAcCGGCCG-----CUGG-UGG- -5'
6753 5' -53.9 NC_001875.2 + 40144 0.66 0.941281
Target:  5'- cGGCAACAGccAGuc-GCCcaaaaaaacgGGCGccGCCACCa -3'
miRNA:   3'- -CCGUUGUU--UCuacCGG----------CCGC--UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 125857 0.66 0.941281
Target:  5'- cGGCAcGCGcuGGgccugcccGUCGGCGACCACa -3'
miRNA:   3'- -CCGU-UGUuuCUac------CGGCCGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.