Results 1 - 20 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6753 | 5' | -53.9 | NC_001875.2 | + | 90012 | 0.66 | 0.958202 |
Target: 5'- cGGCAACu-GGAcgcgcaacUGGCCG-CGG-CGCCg -3' miRNA: 3'- -CCGUUGuuUCU--------ACCGGCcGCUgGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 65654 | 0.66 | 0.958202 |
Target: 5'- aGCAACAAAaacagGGCCacaaacGCGACCAgCCc -3' miRNA: 3'- cCGUUGUUUcua--CCGGc-----CGCUGGU-GG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 47763 | 0.66 | 0.958202 |
Target: 5'- aGCAuuGAAGA-GGCgGGCGAa-ACCa -3' miRNA: 3'- cCGUugUUUCUaCCGgCCGCUggUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 64554 | 0.66 | 0.958202 |
Target: 5'- -aCGGCuuGGugcUGGCCGGCGACUc-- -3' miRNA: 3'- ccGUUGuuUCu--ACCGGCCGCUGGugg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 73540 | 0.66 | 0.958202 |
Target: 5'- cGCGcCAAAGAugcagUGGuuGGuCGACCGUCg -3' miRNA: 3'- cCGUuGUUUCU-----ACCggCC-GCUGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 89270 | 0.66 | 0.957825 |
Target: 5'- cGCGcguGCGccGAccUGGCgCGGCugggcgcGACCACCg -3' miRNA: 3'- cCGU---UGUuuCU--ACCG-GCCG-------CUGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 129079 | 0.66 | 0.957065 |
Target: 5'- gGGCAugaACAAcGAguaccgcaucagccUGGCCaaaaaaggcGGCGGCUGCCc -3' miRNA: 3'- -CCGU---UGUUuCU--------------ACCGG---------CCGCUGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 36102 | 0.66 | 0.954329 |
Target: 5'- cGGCAGCAcgcGgcGG-CGGCG-CCGCUc -3' miRNA: 3'- -CCGUUGUuu-CuaCCgGCCGCuGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 8792 | 0.66 | 0.954329 |
Target: 5'- uGGCAAacaagcugccCAGAGAaucggguugGGCaGGCGGCgCGCCc -3' miRNA: 3'- -CCGUU----------GUUUCUa--------CCGgCCGCUG-GUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 27284 | 0.66 | 0.954329 |
Target: 5'- uGGUuuUAGuuGGGUGGUCGcCGGCCAUCu -3' miRNA: 3'- -CCGuuGUU--UCUACCGGCcGCUGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 11888 | 0.66 | 0.954329 |
Target: 5'- cGGCGACGGAGG-GGUCGuCGACaaugaGCa -3' miRNA: 3'- -CCGUUGUUUCUaCCGGCcGCUGg----UGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 129526 | 0.66 | 0.954329 |
Target: 5'- uGCAgGCcGAGcUGGCCGagcugcgcGCGGCCACg -3' miRNA: 3'- cCGU-UGuUUCuACCGGC--------CGCUGGUGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 43972 | 0.66 | 0.954329 |
Target: 5'- -uCAACAc--AUGGUCGcCGACCGCCa -3' miRNA: 3'- ccGUUGUuucUACCGGCcGCUGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 39126 | 0.66 | 0.954329 |
Target: 5'- uGGCGGCGAcGAcccUGaCCGGCGAUgaugGCCa -3' miRNA: 3'- -CCGUUGUUuCU---ACcGGCCGCUGg---UGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 74104 | 0.66 | 0.954329 |
Target: 5'- gGGCAGCGAcGccGuGCUGGCGcguguUCGCCu -3' miRNA: 3'- -CCGUUGUUuCuaC-CGGCCGCu----GGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 7438 | 0.66 | 0.954329 |
Target: 5'- gGGCAACugcgc--GCCGGCGAUUGCg -3' miRNA: 3'- -CCGUUGuuucuacCGGCCGCUGGUGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 11983 | 0.66 | 0.954329 |
Target: 5'- uGGCGACGGcguugggcgcGGGUGuGgUGGCGAgCGCg -3' miRNA: 3'- -CCGUUGUU----------UCUAC-CgGCCGCUgGUGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 50349 | 0.66 | 0.954329 |
Target: 5'- cGGCGuCGuuGGcgucgGGCCGcGCGcGCCACUg -3' miRNA: 3'- -CCGUuGUuuCUa----CCGGC-CGC-UGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 77168 | 0.66 | 0.953929 |
Target: 5'- cGGCAACuuuuacUGGCCcgacaacGGCGACgGCg -3' miRNA: 3'- -CCGUUGuuucu-ACCGG-------CCGCUGgUGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 29399 | 0.66 | 0.953121 |
Target: 5'- gGGCGGCAAGGGcgccaacccggcgcUcGGCaaCGGCGAgCGCg -3' miRNA: 3'- -CCGUUGUUUCU--------------A-CCG--GCCGCUgGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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