miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 104543 1 0.01673
Target:  5'- uGGCAAacAAGAUGGCCGGCGACCACCc -3'
miRNA:   3'- -CCGUUguUUCUACCGGCCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 3165 0.9 0.074869
Target:  5'- gGGCGGCGAguAGGUGaGCCGGCGGCCGCg -3'
miRNA:   3'- -CCGUUGUU--UCUAC-CGGCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 39165 0.81 0.27422
Target:  5'- gGGCcGCGAGGcgGGCCGGCGGuuGCg -3'
miRNA:   3'- -CCGuUGUUUCuaCCGGCCGCUggUGg -5'
6753 5' -53.9 NC_001875.2 + 66309 0.8 0.294549
Target:  5'- cGGcCGGCGAGuuGAUGGCgugGGCGGCCGCCg -3'
miRNA:   3'- -CC-GUUGUUU--CUACCGg--CCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 89762 0.79 0.35442
Target:  5'- cGGCAAaau-GGUGGUCGGCGACgCGCUc -3'
miRNA:   3'- -CCGUUguuuCUACCGGCCGCUG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 125320 0.79 0.35442
Target:  5'- aGCGACGAGGAccggUGGaCGGCGGCCAgCg -3'
miRNA:   3'- cCGUUGUUUCU----ACCgGCCGCUGGUgG- -5'
6753 5' -53.9 NC_001875.2 + 70185 0.78 0.362482
Target:  5'- cGCAGCGAgccGGgcGGCgaCGGCGACCACUg -3'
miRNA:   3'- cCGUUGUU---UCuaCCG--GCCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 21304 0.78 0.384876
Target:  5'- uGGCAgaaaagcucaagaaGCGccAGGUGGCCcGCGGCCACCu -3'
miRNA:   3'- -CCGU--------------UGUu-UCUACCGGcCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 105888 0.77 0.404662
Target:  5'- cGguGCAGuacccgauGGcgGGCgCGGCGGCCACCa -3'
miRNA:   3'- cCguUGUU--------UCuaCCG-GCCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 49641 0.76 0.449807
Target:  5'- cGGCGACAcGAGcgGccGCCGGCGcCCAUCg -3'
miRNA:   3'- -CCGUUGU-UUCuaC--CGGCCGCuGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 10159 0.76 0.459166
Target:  5'- cGCGGCGu-GGUGGCCGacgaGACCACCg -3'
miRNA:   3'- cCGUUGUuuCUACCGGCcg--CUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 21958 0.76 0.459166
Target:  5'- cGGC-GCGGGGAUGGgCGGCG-CCAgCg -3'
miRNA:   3'- -CCGuUGUUUCUACCgGCCGCuGGUgG- -5'
6753 5' -53.9 NC_001875.2 + 17477 0.76 0.478189
Target:  5'- aGCAACAAA-AUGGCCGuGCuGACCGCg -3'
miRNA:   3'- cCGUUGUUUcUACCGGC-CG-CUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 110724 0.75 0.507424
Target:  5'- cGCAACGGAGAacgcggggcgcgUGcaguuuaaGCgCGGCGACCGCCg -3'
miRNA:   3'- cCGUUGUUUCU------------AC--------CG-GCCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 37569 0.75 0.527329
Target:  5'- cGGCAuCGAguGGAUGcGCCGGCGcgagcGCCGCg -3'
miRNA:   3'- -CCGUuGUU--UCUAC-CGGCCGC-----UGGUGg -5'
6753 5' -53.9 NC_001875.2 + 20396 0.74 0.567946
Target:  5'- cGGUaAGCGAcGgcGGUCGGUGAUCACCa -3'
miRNA:   3'- -CCG-UUGUUuCuaCCGGCCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 75239 0.74 0.567946
Target:  5'- cGGCGACGgcGAUGGCggcggcguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUUGUuuCUACCG--------GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 51528 0.74 0.58856
Target:  5'- uGGCAACGAcucGGAcGcGCUGGCGACgGCg -3'
miRNA:   3'- -CCGUUGUU---UCUaC-CGGCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 53866 0.74 0.58856
Target:  5'- uGGCAcCGucGGccuguUGGUCGuGCGGCCGCCg -3'
miRNA:   3'- -CCGUuGUuuCU-----ACCGGC-CGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 26355 0.74 0.58856
Target:  5'- --gGGCAAAGGUGGCCauguacGCGGCCGCa -3'
miRNA:   3'- ccgUUGUUUCUACCGGc-----CGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.