miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 43586 0.71 0.732876
Target:  5'- uGGCGGCGAGcGAcucgacugccUGGuuGcGCGugCGCCg -3'
miRNA:   3'- -CCGUUGUUU-CU----------ACCggC-CGCugGUGG- -5'
6753 5' -53.9 NC_001875.2 + 39644 0.74 0.609305
Target:  5'- cGCAGCGAAccgcgcgcGAguuugGGCCGGCGGCgCGCg -3'
miRNA:   3'- cCGUUGUUU--------CUa----CCGGCCGCUG-GUGg -5'
6753 5' -53.9 NC_001875.2 + 54509 0.74 0.609305
Target:  5'- aGGUcGCGGuAGuuggGGCCGGCcACCGCCg -3'
miRNA:   3'- -CCGuUGUU-UCua--CCGGCCGcUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 42996 0.73 0.640534
Target:  5'- cGGCcguuGCGAAGGUGGCCuccauuGCGAgUGCCg -3'
miRNA:   3'- -CCGu---UGUUUCUACCGGc-----CGCUgGUGG- -5'
6753 5' -53.9 NC_001875.2 + 117343 0.73 0.650941
Target:  5'- cGGCGcggGCGAaccGGcgGGCCGGCuGGCCGUCg -3'
miRNA:   3'- -CCGU---UGUU---UCuaCCGGCCG-CUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 110240 0.73 0.658217
Target:  5'- uGGcCAACGGAGAgcuguucgaacggcUGgGCCGGCuGGCCGCg -3'
miRNA:   3'- -CC-GUUGUUUCU--------------AC-CGGCCG-CUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 90694 0.72 0.6717
Target:  5'- -uCGACGAugGGGUuGCCGGCGcgGCCGCCg -3'
miRNA:   3'- ccGUUGUU--UCUAcCGGCCGC--UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 75272 0.72 0.692325
Target:  5'- cGGCGGCGucggcGAUGGCguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUUGUuu---CUACCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 124556 0.72 0.692325
Target:  5'- cGGCGGCGGGGuc-GCUuuGGCGGCaCACCg -3'
miRNA:   3'- -CCGUUGUUUCuacCGG--CCGCUG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 53866 0.74 0.58856
Target:  5'- uGGCAcCGucGGccuguUGGUCGuGCGGCCGCCg -3'
miRNA:   3'- -CCGUuGUuuCU-----ACCGGC-CGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 26355 0.74 0.58856
Target:  5'- --gGGCAAAGGUGGCCauguacGCGGCCGCa -3'
miRNA:   3'- ccgUUGUUUCUACCGGc-----CGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 75239 0.74 0.567946
Target:  5'- cGGCGACGgcGAUGGCggcggcguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUUGUuuCUACCG--------GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 66309 0.8 0.294549
Target:  5'- cGGcCGGCGAGuuGAUGGCgugGGCGGCCGCCg -3'
miRNA:   3'- -CC-GUUGUUU--CUACCGg--CCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 70185 0.78 0.362482
Target:  5'- cGCAGCGAgccGGgcGGCgaCGGCGACCACUg -3'
miRNA:   3'- cCGUUGUU---UCuaCCG--GCCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 21304 0.78 0.384876
Target:  5'- uGGCAgaaaagcucaagaaGCGccAGGUGGCCcGCGGCCACCu -3'
miRNA:   3'- -CCGU--------------UGUu-UCUACCGGcCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 49641 0.76 0.449807
Target:  5'- cGGCGACAcGAGcgGccGCCGGCGcCCAUCg -3'
miRNA:   3'- -CCGUUGU-UUCuaC--CGGCCGCuGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 10159 0.76 0.459166
Target:  5'- cGCGGCGu-GGUGGCCGacgaGACCACCg -3'
miRNA:   3'- cCGUUGUuuCUACCGGCcg--CUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 110724 0.75 0.507424
Target:  5'- cGCAACGGAGAacgcggggcgcgUGcaguuuaaGCgCGGCGACCGCCg -3'
miRNA:   3'- cCGUUGUUUCU------------AC--------CG-GCCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 37569 0.75 0.527329
Target:  5'- cGGCAuCGAguGGAUGcGCCGGCGcgagcGCCGCg -3'
miRNA:   3'- -CCGUuGUU--UCUAC-CGGCCGC-----UGGUGg -5'
6753 5' -53.9 NC_001875.2 + 20396 0.74 0.567946
Target:  5'- cGGUaAGCGAcGgcGGUCGGUGAUCACCa -3'
miRNA:   3'- -CCG-UUGUUuCuaCCGGCCGCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.