miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 104543 1 0.01673
Target:  5'- uGGCAAacAAGAUGGCCGGCGACCACCc -3'
miRNA:   3'- -CCGUUguUUCUACCGGCCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 19954 0.71 0.732876
Target:  5'- cGGC-GCGAcGGUccGGCCGGCGcCuCGCCg -3'
miRNA:   3'- -CCGuUGUUuCUA--CCGGCCGCuG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 128007 0.71 0.742812
Target:  5'- aGGCuGC--GGccGcGCCGGCGugCGCCg -3'
miRNA:   3'- -CCGuUGuuUCuaC-CGGCCGCugGUGG- -5'
6753 5' -53.9 NC_001875.2 + 90012 0.66 0.958202
Target:  5'- cGGCAACu-GGAcgcgcaacUGGCCG-CGG-CGCCg -3'
miRNA:   3'- -CCGUUGuuUCU--------ACCGGCcGCUgGUGG- -5'
6753 5' -53.9 NC_001875.2 + 105888 0.77 0.404662
Target:  5'- cGguGCAGuacccgauGGcgGGCgCGGCGGCCACCa -3'
miRNA:   3'- cCguUGUU--------UCuaCCG-GCCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 21958 0.76 0.459166
Target:  5'- cGGC-GCGGGGAUGGgCGGCG-CCAgCg -3'
miRNA:   3'- -CCGuUGUUUCUACCgGCCGCuGGUgG- -5'
6753 5' -53.9 NC_001875.2 + 51528 0.74 0.58856
Target:  5'- uGGCAACGAcucGGAcGcGCUGGCGACgGCg -3'
miRNA:   3'- -CCGUUGUU---UCUaC-CGGCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 48108 0.74 0.609305
Target:  5'- gGGCAcaaacgcguACAAcgagugaaacAGGUGGCCGGUGcCCGCa -3'
miRNA:   3'- -CCGU---------UGUU----------UCUACCGGCCGCuGGUGg -5'
6753 5' -53.9 NC_001875.2 + 75585 0.72 0.692325
Target:  5'- gGGCGGCAAAGuacUGcagccgcgcGCCGGCGugUACg -3'
miRNA:   3'- -CCGUUGUUUCu--AC---------CGGCCGCugGUGg -5'
6753 5' -53.9 NC_001875.2 + 96301 0.71 0.732876
Target:  5'- aGGCGGCc-GGGUGGgCGGCcAgCACCg -3'
miRNA:   3'- -CCGUUGuuUCUACCgGCCGcUgGUGG- -5'
6753 5' -53.9 NC_001875.2 + 81675 0.72 0.692325
Target:  5'- cGGCGACGAAGAggcGGCCaugcagaaGGCGcGCCAg- -3'
miRNA:   3'- -CCGUUGUUUCUa--CCGG--------CCGC-UGGUgg -5'
6753 5' -53.9 NC_001875.2 + 124791 0.72 0.6717
Target:  5'- cGCAGCGGAaccaGGCCGacaagcgcGCGGCCACCu -3'
miRNA:   3'- cCGUUGUUUcua-CCGGC--------CGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 3165 0.9 0.074869
Target:  5'- gGGCGGCGAguAGGUGaGCCGGCGGCCGCg -3'
miRNA:   3'- -CCGUUGUU--UCUAC-CGGCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 77324 0.72 0.712743
Target:  5'- cGCGGC---GGUGGCCGGCcccaACUACCg -3'
miRNA:   3'- cCGUUGuuuCUACCGGCCGc---UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 125320 0.79 0.35442
Target:  5'- aGCGACGAGGAccggUGGaCGGCGGCCAgCg -3'
miRNA:   3'- cCGUUGUUUCU----ACCgGCCGCUGGUgG- -5'
6753 5' -53.9 NC_001875.2 + 23161 0.73 0.619707
Target:  5'- gGGCGGCu--GcgGGCaCGGCGGCUGCg -3'
miRNA:   3'- -CCGUUGuuuCuaCCG-GCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 79101 0.71 0.720834
Target:  5'- cGGCAGCGcgcaaauGCUGGCGAuCCGCCg -3'
miRNA:   3'- -CCGUUGUuucuac-CGGCCGCU-GGUGG- -5'
6753 5' -53.9 NC_001875.2 + 32244 0.71 0.742812
Target:  5'- uGCGGCAAAu-UGGCUGcGCG-CCGCCu -3'
miRNA:   3'- cCGUUGUUUcuACCGGC-CGCuGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 89762 0.79 0.35442
Target:  5'- cGGCAAaau-GGUGGUCGGCGACgCGCUc -3'
miRNA:   3'- -CCGUUguuuCUACCGGCCGCUG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 17477 0.76 0.478189
Target:  5'- aGCAACAAA-AUGGCCGuGCuGACCGCg -3'
miRNA:   3'- cCGUUGUUUcUACCGGC-CG-CUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.