miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 27284 0.66 0.954329
Target:  5'- uGGUuuUAGuuGGGUGGUCGcCGGCCAUCu -3'
miRNA:   3'- -CCGuuGUU--UCUACCGGCcGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 75425 0.66 0.936446
Target:  5'- cGGCGuuGGuGAUGGCguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUugUUuCUACCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 33520 0.66 0.936446
Target:  5'- cGCAGCGcGGcuuGCCgGGCGAaaCCACCa -3'
miRNA:   3'- cCGUUGUuUCuacCGG-CCGCU--GGUGG- -5'
6753 5' -53.9 NC_001875.2 + 96247 0.66 0.95022
Target:  5'- --aAACGuAAGAUGGCgccaucaaaaUGGCGGCCAUg -3'
miRNA:   3'- ccgUUGU-UUCUACCG----------GCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 39126 0.66 0.954329
Target:  5'- uGGCGGCGAcGAcccUGaCCGGCGAUgaugGCCa -3'
miRNA:   3'- -CCGUUGUUuCU---ACcGGCCGCUGg---UGG- -5'
6753 5' -53.9 NC_001875.2 + 75377 0.66 0.95022
Target:  5'- uGGCGuuGGuGAUGGCguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUugUUuCUACCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 90012 0.66 0.958202
Target:  5'- cGGCAACu-GGAcgcgcaacUGGCCG-CGG-CGCCg -3'
miRNA:   3'- -CCGUUGuuUCU--------ACCGGCcGCUgGUGG- -5'
6753 5' -53.9 NC_001875.2 + 33144 0.66 0.936446
Target:  5'- uGGCGGCAGGGcaacaGCaCGGCGucgcGCUGCCg -3'
miRNA:   3'- -CCGUUGUUUCuac--CG-GCCGC----UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 7438 0.66 0.954329
Target:  5'- gGGCAACugcgc--GCCGGCGAUUGCg -3'
miRNA:   3'- -CCGUUGuuucuacCGGCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 43972 0.66 0.954329
Target:  5'- -uCAACAc--AUGGUCGcCGACCGCCa -3'
miRNA:   3'- ccGUUGUuucUACCGGCcGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 115423 0.66 0.945872
Target:  5'- uGGcCAACGAAcGGuuUGG-CGGCGACgaaCACCg -3'
miRNA:   3'- -CC-GUUGUUU-CU--ACCgGCCGCUG---GUGG- -5'
6753 5' -53.9 NC_001875.2 + 68041 0.66 0.936446
Target:  5'- cGCGcCAAAGc-GGUuuGCGGCCACCa -3'
miRNA:   3'- cCGUuGUUUCuaCCGgcCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 82048 0.66 0.935948
Target:  5'- cGCGGCGGgcugagcGGAaugcUGGCCGGgGGCUuugcgGCCu -3'
miRNA:   3'- cCGUUGUU-------UCU----ACCGGCCgCUGG-----UGG- -5'
6753 5' -53.9 NC_001875.2 + 8792 0.66 0.954329
Target:  5'- uGGCAAacaagcugccCAGAGAaucggguugGGCaGGCGGCgCGCCc -3'
miRNA:   3'- -CCGUU----------GUUUCUa--------CCGgCCGCUG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 75455 0.66 0.936446
Target:  5'- cGGCGuuGGuGAUGGCguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUugUUuCUACCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 129526 0.66 0.954329
Target:  5'- uGCAgGCcGAGcUGGCCGagcugcgcGCGGCCACg -3'
miRNA:   3'- cCGU-UGuUUCuACCGGC--------CGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 11983 0.66 0.954329
Target:  5'- uGGCGACGGcguugggcgcGGGUGuGgUGGCGAgCGCg -3'
miRNA:   3'- -CCGUUGUU----------UCUAC-CgGCCGCUgGUGg -5'
6753 5' -53.9 NC_001875.2 + 75305 0.66 0.936446
Target:  5'- cGGCGuuGGuGAUGGCguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUugUUuCUACCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 38305 0.66 0.941281
Target:  5'- uGGCgAGCGccGAcaaGGCCGGCGGCaUGCa -3'
miRNA:   3'- -CCG-UUGUuuCUa--CCGGCCGCUG-GUGg -5'
6753 5' -53.9 NC_001875.2 + 90823 0.66 0.95022
Target:  5'- cGGCcACGc----GGuuGGCGACCugCu -3'
miRNA:   3'- -CCGuUGUuucuaCCggCCGCUGGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.