Results 21 - 40 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6753 | 5' | -53.9 | NC_001875.2 | + | 131756 | 0.66 | 0.938409 |
Target: 5'- cGGCGGCGGAucgGGCgGcGCGucauuggugucguucGCCGCCg -3' miRNA: 3'- -CCGUUGUUUcuaCCGgC-CGC---------------UGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 66119 | 0.66 | 0.939856 |
Target: 5'- gGGCGGCGAGGcgGcGCCgcccgcggaacaguGGuCGGCCGgCg -3' miRNA: 3'- -CCGUUGUUUCuaC-CGG--------------CC-GCUGGUgG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 47763 | 0.66 | 0.958202 |
Target: 5'- aGCAuuGAAGA-GGCgGGCGAa-ACCa -3' miRNA: 3'- cCGUugUUUCUaCCGgCCGCUggUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 90012 | 0.66 | 0.958202 |
Target: 5'- cGGCAACu-GGAcgcgcaacUGGCCG-CGG-CGCCg -3' miRNA: 3'- -CCGUUGuuUCU--------ACCGGCcGCUgGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 65654 | 0.66 | 0.958202 |
Target: 5'- aGCAACAAAaacagGGCCacaaacGCGACCAgCCc -3' miRNA: 3'- cCGUUGUUUcua--CCGGc-----CGCUGGU-GG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 11983 | 0.66 | 0.954329 |
Target: 5'- uGGCGACGGcguugggcgcGGGUGuGgUGGCGAgCGCg -3' miRNA: 3'- -CCGUUGUU----------UCUAC-CgGCCGCUgGUGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 63847 | 0.66 | 0.945872 |
Target: 5'- gGGaCGACAuaAAGGUGuCCGGCG-CCugUu -3' miRNA: 3'- -CC-GUUGU--UUCUACcGGCCGCuGGugG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 129526 | 0.66 | 0.954329 |
Target: 5'- uGCAgGCcGAGcUGGCCGagcugcgcGCGGCCACg -3' miRNA: 3'- cCGU-UGuUUCuACCGGC--------CGCUGGUGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 39126 | 0.66 | 0.954329 |
Target: 5'- uGGCGGCGAcGAcccUGaCCGGCGAUgaugGCCa -3' miRNA: 3'- -CCGUUGUUuCU---ACcGGCCGCUGg---UGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 27284 | 0.66 | 0.954329 |
Target: 5'- uGGUuuUAGuuGGGUGGUCGcCGGCCAUCu -3' miRNA: 3'- -CCGuuGUU--UCUACCGGCcGCUGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 7438 | 0.66 | 0.954329 |
Target: 5'- gGGCAACugcgc--GCCGGCGAUUGCg -3' miRNA: 3'- -CCGUUGuuucuacCGGCCGCUGGUGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 73540 | 0.66 | 0.958202 |
Target: 5'- cGCGcCAAAGAugcagUGGuuGGuCGACCGUCg -3' miRNA: 3'- cCGUuGUUUCU-----ACCggCC-GCUGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 58509 | 0.66 | 0.940809 |
Target: 5'- gGGC-ACAAAGAaaggGGCguaaagcgcauucUGGUGcCCACCa -3' miRNA: 3'- -CCGuUGUUUCUa---CCG-------------GCCGCuGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 123973 | 0.66 | 0.936446 |
Target: 5'- cGGCGcuuguucucGCAAAGAauacGGCUGcauguugcgcGCGACCACg -3' miRNA: 3'- -CCGU---------UGUUUCUa---CCGGC----------CGCUGGUGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 64554 | 0.66 | 0.958202 |
Target: 5'- -aCGGCuuGGugcUGGCCGGCGACUc-- -3' miRNA: 3'- ccGUUGuuUCu--ACCGGCCGCUGGugg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 74104 | 0.66 | 0.954329 |
Target: 5'- gGGCAGCGAcGccGuGCUGGCGcguguUCGCCu -3' miRNA: 3'- -CCGUUGUUuCuaC-CGGCCGCu----GGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 35499 | 0.66 | 0.936446 |
Target: 5'- cGGCAugACAAcuGccGGCaacgGGCGGCCGCg -3' miRNA: 3'- -CCGU--UGUUu-CuaCCGg---CCGCUGGUGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 50349 | 0.66 | 0.954329 |
Target: 5'- cGGCGuCGuuGGcgucgGGCCGcGCGcGCCACUg -3' miRNA: 3'- -CCGUuGUuuCUa----CCGGC-CGC-UGGUGG- -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 125857 | 0.66 | 0.941281 |
Target: 5'- cGGCAcGCGcuGGgccugcccGUCGGCGACCACa -3' miRNA: 3'- -CCGU-UGUuuCUac------CGGCCGCUGGUGg -5' |
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6753 | 5' | -53.9 | NC_001875.2 | + | 20036 | 0.66 | 0.936446 |
Target: 5'- aGCAGCcAGGcgccgucGGCCGcGUGcACCGCCg -3' miRNA: 3'- cCGUUGuUUCua-----CCGGC-CGC-UGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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