miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 12712 0.66 0.945872
Target:  5'- gGGCGACAAAGu--GC--GCGGCCAUCu -3'
miRNA:   3'- -CCGUUGUUUCuacCGgcCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 12815 0.68 0.90225
Target:  5'- uGUAugGGgguAGAUGGCgCGGuUGGCCACg -3'
miRNA:   3'- cCGUugUU---UCUACCG-GCC-GCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 13421 0.68 0.881159
Target:  5'- uGGCAACAcucuuuGGGUuucaaaaaccgcgGGUCGGCGGaCGCCu -3'
miRNA:   3'- -CCGUUGUu-----UCUA-------------CCGGCCGCUgGUGG- -5'
6753 5' -53.9 NC_001875.2 + 14791 0.69 0.851522
Target:  5'- -aCAGCAAAGAcaugcucacuuuUGGCCGcGCGGCgGgCCu -3'
miRNA:   3'- ccGUUGUUUCU------------ACCGGC-CGCUGgU-GG- -5'
6753 5' -53.9 NC_001875.2 + 16244 0.71 0.732876
Target:  5'- cGGCGACGAGGccgucacgcgcGUGcgucacgugguGcCCGGCGACCGCa -3'
miRNA:   3'- -CCGUUGUUUC-----------UAC-----------C-GGCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 17477 0.76 0.478189
Target:  5'- aGCAACAAA-AUGGCCGuGCuGACCGCg -3'
miRNA:   3'- cCGUUGUUUcUACCGGC-CG-CUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 19761 0.71 0.762373
Target:  5'- uGGCuuAC-AAGAgGGcCCGGCaGCCGCCa -3'
miRNA:   3'- -CCGu-UGuUUCUaCC-GGCCGcUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 19954 0.71 0.732876
Target:  5'- cGGC-GCGAcGGUccGGCCGGCGcCuCGCCg -3'
miRNA:   3'- -CCGuUGUUuCUA--CCGGCCGCuG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 20036 0.66 0.936446
Target:  5'- aGCAGCcAGGcgccgucGGCCGcGUGcACCGCCg -3'
miRNA:   3'- cCGUUGuUUCua-----CCGGC-CGC-UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 20396 0.74 0.567946
Target:  5'- cGGUaAGCGAcGgcGGUCGGUGAUCACCa -3'
miRNA:   3'- -CCG-UUGUUuCuaCCGGCCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 20751 0.66 0.945424
Target:  5'- cGCAACaAAAGGUuuucacgGcGCCGGCGucguCCACg -3'
miRNA:   3'- cCGUUG-UUUCUA-------C-CGGCCGCu---GGUGg -5'
6753 5' -53.9 NC_001875.2 + 21304 0.78 0.384876
Target:  5'- uGGCAgaaaagcucaagaaGCGccAGGUGGCCcGCGGCCACCu -3'
miRNA:   3'- -CCGU--------------UGUu-UCUACCGGcCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 21958 0.76 0.459166
Target:  5'- cGGC-GCGGGGAUGGgCGGCG-CCAgCg -3'
miRNA:   3'- -CCGuUGUUUCUACCgGCCGCuGGUgG- -5'
6753 5' -53.9 NC_001875.2 + 23161 0.73 0.619707
Target:  5'- gGGCGGCu--GcgGGCaCGGCGGCUGCg -3'
miRNA:   3'- -CCGUUGuuuCuaCCG-GCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 26355 0.74 0.58856
Target:  5'- --gGGCAAAGGUGGCCauguacGCGGCCGCa -3'
miRNA:   3'- ccgUUGUUUCUACCGGc-----CGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 27284 0.66 0.954329
Target:  5'- uGGUuuUAGuuGGGUGGUCGcCGGCCAUCu -3'
miRNA:   3'- -CCGuuGUU--UCUACCGGCcGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 28826 0.68 0.888902
Target:  5'- cGGUGACcgucAGGGUGGCCgacacggacGGCGGgCACUu -3'
miRNA:   3'- -CCGUUGu---UUCUACCGG---------CCGCUgGUGG- -5'
6753 5' -53.9 NC_001875.2 + 29198 0.68 0.901605
Target:  5'- aGGCAACuu---UGGCCaguugauGGCGGCCAa- -3'
miRNA:   3'- -CCGUUGuuucuACCGG-------CCGCUGGUgg -5'
6753 5' -53.9 NC_001875.2 + 29399 0.66 0.953121
Target:  5'- gGGCGGCAAGGGcgccaacccggcgcUcGGCaaCGGCGAgCGCg -3'
miRNA:   3'- -CCGUUGUUUCU--------------A-CCG--GCCGCUgGUGg -5'
6753 5' -53.9 NC_001875.2 + 29816 0.7 0.817884
Target:  5'- cGGCGACAAAuauuucucgGGCaCGGCcGACgGCCc -3'
miRNA:   3'- -CCGUUGUUUcua------CCG-GCCG-CUGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.