miRNA display CGI


Results 21 - 40 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 54509 0.74 0.609305
Target:  5'- aGGUcGCGGuAGuuggGGCCGGCcACCGCCg -3'
miRNA:   3'- -CCGuUGUU-UCua--CCGGCCGcUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 48108 0.74 0.609305
Target:  5'- gGGCAcaaacgcguACAAcgagugaaacAGGUGGCCGGUGcCCGCa -3'
miRNA:   3'- -CCGU---------UGUU----------UCUACCGGCCGCuGGUGg -5'
6753 5' -53.9 NC_001875.2 + 39644 0.74 0.609305
Target:  5'- cGCAGCGAAccgcgcgcGAguuugGGCCGGCGGCgCGCg -3'
miRNA:   3'- cCGUUGUUU--------CUa----CCGGCCGCUG-GUGg -5'
6753 5' -53.9 NC_001875.2 + 23161 0.73 0.619707
Target:  5'- gGGCGGCu--GcgGGCaCGGCGGCUGCg -3'
miRNA:   3'- -CCGUUGuuuCuaCCG-GCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 42996 0.73 0.640534
Target:  5'- cGGCcguuGCGAAGGUGGCCuccauuGCGAgUGCCg -3'
miRNA:   3'- -CCGu---UGUUUCUACCGGc-----CGCUgGUGG- -5'
6753 5' -53.9 NC_001875.2 + 117343 0.73 0.650941
Target:  5'- cGGCGcggGCGAaccGGcgGGCCGGCuGGCCGUCg -3'
miRNA:   3'- -CCGU---UGUU---UCuaCCGGCCG-CUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 110240 0.73 0.658217
Target:  5'- uGGcCAACGGAGAgcuguucgaacggcUGgGCCGGCuGGCCGCg -3'
miRNA:   3'- -CC-GUUGUUUCU--------------AC-CGGCCG-CUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 90694 0.72 0.6717
Target:  5'- -uCGACGAugGGGUuGCCGGCGcgGCCGCCg -3'
miRNA:   3'- ccGUUGUU--UCUAcCGGCCGC--UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 124791 0.72 0.6717
Target:  5'- cGCAGCGGAaccaGGCCGacaagcgcGCGGCCACCu -3'
miRNA:   3'- cCGUUGUUUcua-CCGGC--------CGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 75585 0.72 0.692325
Target:  5'- gGGCGGCAAAGuacUGcagccgcgcGCCGGCGugUACg -3'
miRNA:   3'- -CCGUUGUUUCu--AC---------CGGCCGCugGUGg -5'
6753 5' -53.9 NC_001875.2 + 81675 0.72 0.692325
Target:  5'- cGGCGACGAAGAggcGGCCaugcagaaGGCGcGCCAg- -3'
miRNA:   3'- -CCGUUGUUUCUa--CCGG--------CCGC-UGGUgg -5'
6753 5' -53.9 NC_001875.2 + 83570 0.72 0.692325
Target:  5'- cGGCgGACAcauGAGGUGucCCGGCGgggcGCCGCCg -3'
miRNA:   3'- -CCG-UUGU---UUCUACc-GGCCGC----UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 75272 0.72 0.692325
Target:  5'- cGGCGGCGucggcGAUGGCguCGGCGAUgGCg -3'
miRNA:   3'- -CCGUUGUuu---CUACCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 124556 0.72 0.692325
Target:  5'- cGGCGGCGGGGuc-GCUuuGGCGGCaCACCg -3'
miRNA:   3'- -CCGUUGUUUCuacCGG--CCGCUG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 77324 0.72 0.712743
Target:  5'- cGCGGC---GGUGGCCGGCcccaACUACCg -3'
miRNA:   3'- cCGUUGuuuCUACCGGCCGc---UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 79101 0.71 0.720834
Target:  5'- cGGCAGCGcgcaaauGCUGGCGAuCCGCCg -3'
miRNA:   3'- -CCGUUGUuucuac-CGGCCGCU-GGUGG- -5'
6753 5' -53.9 NC_001875.2 + 19954 0.71 0.732876
Target:  5'- cGGC-GCGAcGGUccGGCCGGCGcCuCGCCg -3'
miRNA:   3'- -CCGuUGUUuCUA--CCGGCCGCuG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 16244 0.71 0.732876
Target:  5'- cGGCGACGAGGccgucacgcgcGUGcgucacgugguGcCCGGCGACCGCa -3'
miRNA:   3'- -CCGUUGUUUC-----------UAC-----------C-GGCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 96301 0.71 0.732876
Target:  5'- aGGCGGCc-GGGUGGgCGGCcAgCACCg -3'
miRNA:   3'- -CCGUUGuuUCUACCgGCCGcUgGUGG- -5'
6753 5' -53.9 NC_001875.2 + 43586 0.71 0.732876
Target:  5'- uGGCGGCGAGcGAcucgacugccUGGuuGcGCGugCGCCg -3'
miRNA:   3'- -CCGUUGUUU-CU----------ACCggC-CGCugGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.