miRNA display CGI


Results 1 - 20 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 3048 0.7 0.817884
Target:  5'- gGGCAGCGcguAAGA-GGCgCGcaGCGGCgCGCCg -3'
miRNA:   3'- -CCGUUGU---UUCUaCCG-GC--CGCUG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 3118 0.7 0.790794
Target:  5'- cGCGGCGcAGAccUGGgCGGCGAagcCCGCUg -3'
miRNA:   3'- cCGUUGUuUCU--ACCgGCCGCU---GGUGG- -5'
6753 5' -53.9 NC_001875.2 + 3165 0.9 0.074869
Target:  5'- gGGCGGCGAguAGGUGaGCCGGCGGCCGCg -3'
miRNA:   3'- -CCGUUGUU--UCUAC-CGGCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 3514 0.67 0.908564
Target:  5'- cGCGACcc-GAUaaGGCCGGCcuacguGACUGCCg -3'
miRNA:   3'- cCGUUGuuuCUA--CCGGCCG------CUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 3694 0.67 0.920458
Target:  5'- uGCAguGCAAAaaaguuGGUGGUgGGgaGGCCACCg -3'
miRNA:   3'- cCGU--UGUUU------CUACCGgCCg-CUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 3853 0.67 0.914634
Target:  5'- aGCAGCAGGuucguGUGGCaCGGCagcaccgcGCCGCCa -3'
miRNA:   3'- cCGUUGUUUc----UACCG-GCCGc-------UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 5211 0.7 0.817884
Target:  5'- gGGCGAUAAcgcuGAUGGCCuacGUGACUAgCCu -3'
miRNA:   3'- -CCGUUGUUu---CUACCGGc--CGCUGGU-GG- -5'
6753 5' -53.9 NC_001875.2 + 7101 0.67 0.931364
Target:  5'- uGCAGCGcgcGcUGGCCGacauUGACCGCCa -3'
miRNA:   3'- cCGUUGUuu-CuACCGGCc---GCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 7268 0.66 0.941281
Target:  5'- aGCAggaGCAAAcGGUGuGCCGccaaaGCGACCccGCCg -3'
miRNA:   3'- cCGU---UGUUU-CUAC-CGGC-----CGCUGG--UGG- -5'
6753 5' -53.9 NC_001875.2 + 7438 0.66 0.954329
Target:  5'- gGGCAACugcgc--GCCGGCGAUUGCg -3'
miRNA:   3'- -CCGUUGuuucuacCGGCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 7591 0.71 0.771979
Target:  5'- uGGCGugauCAAGGAuuuUGGCCGGCaGugCAa- -3'
miRNA:   3'- -CCGUu---GUUUCU---ACCGGCCG-CugGUgg -5'
6753 5' -53.9 NC_001875.2 + 8792 0.66 0.954329
Target:  5'- uGGCAAacaagcugccCAGAGAaucggguugGGCaGGCGGCgCGCCc -3'
miRNA:   3'- -CCGUU----------GUUUCUa--------CCGgCCGCUG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 9363 0.68 0.881874
Target:  5'- gGGCAucGCAAAGGU-GCUGcGCGcGCCGCa -3'
miRNA:   3'- -CCGU--UGUUUCUAcCGGC-CGC-UGGUGg -5'
6753 5' -53.9 NC_001875.2 + 10159 0.76 0.459166
Target:  5'- cGCGGCGu-GGUGGCCGacgaGACCACCg -3'
miRNA:   3'- cCGUUGUuuCUACCGGCcg--CUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 10443 0.67 0.920458
Target:  5'- cGCAGCAGcuuuGAcgcGGCgCGGCGGCgCGCUc -3'
miRNA:   3'- cCGUUGUUu---CUa--CCG-GCCGCUG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 10625 0.67 0.926035
Target:  5'- -aCAACAAcc--GGCCGGUG-CCGCCc -3'
miRNA:   3'- ccGUUGUUucuaCCGGCCGCuGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 11068 0.68 0.884713
Target:  5'- uGCAGCAGuu-UGGCgUGGCGcgcgcccuggacacgGCCGCCg -3'
miRNA:   3'- cCGUUGUUucuACCG-GCCGC---------------UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 11302 0.67 0.908564
Target:  5'- uGC-ACAAAccccauGGUGGCCuGCacGACCGCCa -3'
miRNA:   3'- cCGuUGUUU------CUACCGGcCG--CUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 11888 0.66 0.954329
Target:  5'- cGGCGACGGAGG-GGUCGuCGACaaugaGCa -3'
miRNA:   3'- -CCGUUGUUUCUaCCGGCcGCUGg----UGg -5'
6753 5' -53.9 NC_001875.2 + 11983 0.66 0.954329
Target:  5'- uGGCGACGGcguugggcgcGGGUGuGgUGGCGAgCGCg -3'
miRNA:   3'- -CCGUUGUU----------UCUAC-CgGCCGCUgGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.