miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6753 5' -53.9 NC_001875.2 + 131756 0.66 0.938409
Target:  5'- cGGCGGCGGAucgGGCgGcGCGucauuggugucguucGCCGCCg -3'
miRNA:   3'- -CCGUUGUUUcuaCCGgC-CGC---------------UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 129964 0.69 0.851522
Target:  5'- uGGCGGCGgcGgcGGCggCGGCGGCgGCa -3'
miRNA:   3'- -CCGUUGUuuCuaCCG--GCCGCUGgUGg -5'
6753 5' -53.9 NC_001875.2 + 129526 0.66 0.954329
Target:  5'- uGCAgGCcGAGcUGGCCGagcugcgcGCGGCCACg -3'
miRNA:   3'- cCGU-UGuUUCuACCGGC--------CGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 129079 0.66 0.957065
Target:  5'- gGGCAugaACAAcGAguaccgcaucagccUGGCCaaaaaaggcGGCGGCUGCCc -3'
miRNA:   3'- -CCGU---UGUUuCU--------------ACCGG---------CCGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 128007 0.71 0.742812
Target:  5'- aGGCuGC--GGccGcGCCGGCGugCGCCg -3'
miRNA:   3'- -CCGuUGuuUCuaC-CGGCCGCugGUGG- -5'
6753 5' -53.9 NC_001875.2 + 127046 0.67 0.928196
Target:  5'- uGGCGACAGGGcgccggcuGUaauagucaaagccgcGGCCaacGGCGGCCAgCa -3'
miRNA:   3'- -CCGUUGUUUC--------UA---------------CCGG---CCGCUGGUgG- -5'
6753 5' -53.9 NC_001875.2 + 125857 0.66 0.941281
Target:  5'- cGGCAcGCGcuGGgccugcccGUCGGCGACCACa -3'
miRNA:   3'- -CCGU-UGUuuCUac------CGGCCGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 125320 0.79 0.35442
Target:  5'- aGCGACGAGGAccggUGGaCGGCGGCCAgCg -3'
miRNA:   3'- cCGUUGUUUCU----ACCgGCCGCUGGUgG- -5'
6753 5' -53.9 NC_001875.2 + 125134 0.69 0.858653
Target:  5'- uGUGGCGGGGcAUGGUguacaaaUGGCGugCGCCg -3'
miRNA:   3'- cCGUUGUUUC-UACCG-------GCCGCugGUGG- -5'
6753 5' -53.9 NC_001875.2 + 124791 0.72 0.6717
Target:  5'- cGCAGCGGAaccaGGCCGacaagcgcGCGGCCACCu -3'
miRNA:   3'- cCGUUGUUUcua-CCGGC--------CGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 124556 0.72 0.692325
Target:  5'- cGGCGGCGGGGuc-GCUuuGGCGGCaCACCg -3'
miRNA:   3'- -CCGUUGUUUCuacCGG--CCGCUG-GUGG- -5'
6753 5' -53.9 NC_001875.2 + 123973 0.66 0.936446
Target:  5'- cGGCGcuuguucucGCAAAGAauacGGCUGcauguugcgcGCGACCACg -3'
miRNA:   3'- -CCGU---------UGUUUCUa---CCGGC----------CGCUGGUGg -5'
6753 5' -53.9 NC_001875.2 + 122680 0.69 0.867135
Target:  5'- cGCAGCAAAaa--GuuGGCGugCGCCg -3'
miRNA:   3'- cCGUUGUUUcuacCggCCGCugGUGG- -5'
6753 5' -53.9 NC_001875.2 + 121670 0.7 0.817884
Target:  5'- cGGCggUGAcGGUGGUcuCGuCGGCCACCa -3'
miRNA:   3'- -CCGuuGUUuCUACCG--GCcGCUGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 121285 0.69 0.859435
Target:  5'- cGCAGCugccuGAUGGUgGGCGugCuuuuuCCg -3'
miRNA:   3'- cCGUUGuuu--CUACCGgCCGCugGu----GG- -5'
6753 5' -53.9 NC_001875.2 + 119552 0.66 0.945872
Target:  5'- cGGCGGCGu-GccGGCugcacaCGGUGGCCugCa -3'
miRNA:   3'- -CCGUUGUuuCuaCCG------GCCGCUGGugG- -5'
6753 5' -53.9 NC_001875.2 + 119122 0.68 0.90225
Target:  5'- gGGCGA-AGAGAUGGCCGcGCacuuugUCGCCc -3'
miRNA:   3'- -CCGUUgUUUCUACCGGC-CGcu----GGUGG- -5'
6753 5' -53.9 NC_001875.2 + 118996 0.68 0.888902
Target:  5'- cGGCuGCGugcua-GCCGGCG-CCGCCg -3'
miRNA:   3'- -CCGuUGUuucuacCGGCCGCuGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 117926 0.71 0.760437
Target:  5'- cGGCAAgcugca-GGCCGGCGugcgcGCCGCCg -3'
miRNA:   3'- -CCGUUguuucuaCCGGCCGC-----UGGUGG- -5'
6753 5' -53.9 NC_001875.2 + 117343 0.73 0.650941
Target:  5'- cGGCGcggGCGAaccGGcgGGCCGGCuGGCCGUCg -3'
miRNA:   3'- -CCGU---UGUU---UCuaCCGGCCG-CUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.