miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6754 5' -61.3 NC_001875.2 + 26777 0.67 0.528861
Target:  5'- cACUCGuugaGCGACGCGCCGUcgagGGUGGUg- -3'
miRNA:   3'- uUGGGC----UGCUGCGCGGCA----CCGUCGuu -5'
6754 5' -61.3 NC_001875.2 + 54716 0.67 0.528861
Target:  5'- uGCCUGGCGACGgG-CGUGGaCAGguAg -3'
miRNA:   3'- uUGGGCUGCUGCgCgGCACC-GUCguU- -5'
6754 5' -61.3 NC_001875.2 + 94427 0.67 0.528861
Target:  5'- cGCCaCGGCcucuuccACGCGCCGUucgaacGGCGGCAGc -3'
miRNA:   3'- uUGG-GCUGc------UGCGCGGCA------CCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 80734 0.67 0.528861
Target:  5'- cGGCgUGcACGACGCGCgacugGGCAGCAAa -3'
miRNA:   3'- -UUGgGC-UGCUGCGCGgca--CCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 41919 0.67 0.519115
Target:  5'- uGGCCCG-CgGACGCGCCGcccuuuauaUGcGCGGCGc -3'
miRNA:   3'- -UUGGGCuG-CUGCGCGGC---------AC-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 100142 0.67 0.509442
Target:  5'- uGCgCCGGCGGCGCGCaagcGGCGGUc- -3'
miRNA:   3'- uUG-GGCUGCUGCGCGgca-CCGUCGuu -5'
6754 5' -61.3 NC_001875.2 + 89775 0.67 0.508478
Target:  5'- --gUCGGCGACGCGCuCGUGcacgugcgcgaacGCAGCGc -3'
miRNA:   3'- uugGGCUGCUGCGCG-GCAC-------------CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 50017 0.68 0.490329
Target:  5'- gGGCgCG-CGugGuCGCCG-GGCGGCGAg -3'
miRNA:   3'- -UUGgGCuGCugC-GCGGCaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 31598 0.68 0.490329
Target:  5'- -gUCCGGCGcCGUGCCGUgGGCGGa-- -3'
miRNA:   3'- uuGGGCUGCuGCGCGGCA-CCGUCguu -5'
6754 5' -61.3 NC_001875.2 + 66106 0.68 0.480897
Target:  5'- aGGCCCGcGCGGCGgGCgGcgaGGCGGCGc -3'
miRNA:   3'- -UUGGGC-UGCUGCgCGgCa--CCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 32450 0.68 0.471556
Target:  5'- cGACCCGcUGGCGcCGCCG-GuGCGGCGc -3'
miRNA:   3'- -UUGGGCuGCUGC-GCGGCaC-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 85660 0.68 0.462306
Target:  5'- uAGCUuaauUGugGGCGCGCCGgccuGCAGCGAc -3'
miRNA:   3'- -UUGG----GCugCUGCGCGGCac--CGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 113662 0.68 0.462306
Target:  5'- cGCCCGcCGGCacCGCCacaGUGGCGGCGu -3'
miRNA:   3'- uUGGGCuGCUGc-GCGG---CACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 33584 0.68 0.453154
Target:  5'- uGCCCGagucgGCGACGUGgCGguugaacacgGGCAGCAGu -3'
miRNA:   3'- uUGGGC-----UGCUGCGCgGCa---------CCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 57533 0.69 0.4441
Target:  5'- -gUCCGGCGccuGCGCGCCGUaGGCGauGCGc -3'
miRNA:   3'- uuGGGCUGC---UGCGCGGCA-CCGU--CGUu -5'
6754 5' -61.3 NC_001875.2 + 58877 0.69 0.4441
Target:  5'- cAACCUaucaGGCGCGCCGUGGCGcccgaaacgcuGCAGa -3'
miRNA:   3'- -UUGGGcug-CUGCGCGGCACCGU-----------CGUU- -5'
6754 5' -61.3 NC_001875.2 + 84154 0.69 0.443201
Target:  5'- -cCCCGcguugagaaacgcGCGGCGCGCCGcGGCcGCGu -3'
miRNA:   3'- uuGGGC-------------UGCUGCGCGGCaCCGuCGUu -5'
6754 5' -61.3 NC_001875.2 + 61603 0.69 0.435149
Target:  5'- gGGCgCCGGCGGCGCuucggGCUGUgucGGCGGCGc -3'
miRNA:   3'- -UUG-GGCUGCUGCG-----CGGCA---CCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 124868 0.69 0.426304
Target:  5'- uGCCCGcuguucaaGCaGCGCGCCGUGGCGaugucGCGg -3'
miRNA:   3'- uUGGGC--------UGcUGCGCGGCACCGU-----CGUu -5'
6754 5' -61.3 NC_001875.2 + 2278 0.69 0.426304
Target:  5'- cAugUUGACGucgugaugcgcGCGCGCCGUGGCcGCGc -3'
miRNA:   3'- -UugGGCUGC-----------UGCGCGGCACCGuCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.