miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6754 5' -61.3 NC_001875.2 + 42741 0.72 0.286961
Target:  5'- cGCgCGGCGACGCGCaugGUGaGCGGCGc -3'
miRNA:   3'- uUGgGCUGCUGCGCGg--CAC-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 44000 0.74 0.205372
Target:  5'- cAGCCCGACGG-GCGCCGUGccCAGCGu -3'
miRNA:   3'- -UUGGGCUGCUgCGCGGCACc-GUCGUu -5'
6754 5' -61.3 NC_001875.2 + 45100 0.67 0.532778
Target:  5'- uGCCCGACGuGCGCGCCuucaugugcgacGagcagugucggccgGGCGGCAAa -3'
miRNA:   3'- uUGGGCUGC-UGCGCGG------------Ca-------------CCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 48050 0.66 0.578479
Target:  5'- aGGCaCGAgGGCGCGCgcuacaacgaGUGGCAGCGu -3'
miRNA:   3'- -UUGgGCUgCUGCGCGg---------CACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 49347 0.67 0.538673
Target:  5'- cAGCgUgGGCGGCGgGCCGUGGU-GCAAc -3'
miRNA:   3'- -UUG-GgCUGCUGCgCGGCACCGuCGUU- -5'
6754 5' -61.3 NC_001875.2 + 50017 0.68 0.490329
Target:  5'- gGGCgCG-CGugGuCGCCG-GGCGGCGAg -3'
miRNA:   3'- -UUGgGCuGCugC-GCGGCaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 52713 0.67 0.535723
Target:  5'- gAGCCCGccGCGGCGCccgccgccgacaacGCCGUGGCcaAGUu- -3'
miRNA:   3'- -UUGGGC--UGCUGCG--------------CGGCACCG--UCGuu -5'
6754 5' -61.3 NC_001875.2 + 54588 0.75 0.172645
Target:  5'- cGCCCGGCGGCGCGCCcacgGcGCGGUAu -3'
miRNA:   3'- uUGGGCUGCUGCGCGGca--C-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 54716 0.67 0.528861
Target:  5'- uGCCUGGCGACGgG-CGUGGaCAGguAg -3'
miRNA:   3'- uUGGGCUGCUGCgCgGCACC-GUCguU- -5'
6754 5' -61.3 NC_001875.2 + 55129 0.67 0.548546
Target:  5'- --aCCGACGcucaGCGCGaCCGacGGCGGCAc -3'
miRNA:   3'- uugGGCUGC----UGCGC-GGCa-CCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 57533 0.69 0.4441
Target:  5'- -gUCCGGCGccuGCGCGCCGUaGGCGauGCGc -3'
miRNA:   3'- uuGGGCUGC---UGCGCGGCA-CCGU--CGUu -5'
6754 5' -61.3 NC_001875.2 + 58877 0.69 0.4441
Target:  5'- cAACCUaucaGGCGCGCCGUGGCGcccgaaacgcuGCAGa -3'
miRNA:   3'- -UUGGGcug-CUGCGCGGCACCGU-----------CGUU- -5'
6754 5' -61.3 NC_001875.2 + 61603 0.69 0.435149
Target:  5'- gGGCgCCGGCGGCGCuucggGCUGUgucGGCGGCGc -3'
miRNA:   3'- -UUG-GGCUGCUGCG-----CGGCA---CCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 61899 0.75 0.181489
Target:  5'- uGGCCCGAC-ACGCGCCGUGucaCGGCGGa -3'
miRNA:   3'- -UUGGGCUGcUGCGCGGCACc--GUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 65754 0.67 0.548546
Target:  5'- gGGCCuCGGCGuauuCGUGCgCGgcgGGCGGCGg -3'
miRNA:   3'- -UUGG-GCUGCu---GCGCG-GCa--CCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 66106 0.68 0.480897
Target:  5'- aGGCCCGcGCGGCGgGCgGcgaGGCGGCGc -3'
miRNA:   3'- -UUGGGC-UGCUGCgCGgCa--CCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 68577 0.66 0.58854
Target:  5'- cGCaCCG-CGugGCGCCGcUGGCcGCc- -3'
miRNA:   3'- uUG-GGCuGCugCGCGGC-ACCGuCGuu -5'
6754 5' -61.3 NC_001875.2 + 69261 0.69 0.408938
Target:  5'- gGGCCgCGGCu-CGaGCCGUGGCGGCGg -3'
miRNA:   3'- -UUGG-GCUGcuGCgCGGCACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 77253 0.73 0.249214
Target:  5'- cGCgCCGugGGCGCGCCGccgGGCgaAGCGg -3'
miRNA:   3'- uUG-GGCugCUGCGCGGCa--CCG--UCGUu -5'
6754 5' -61.3 NC_001875.2 + 77657 0.69 0.392021
Target:  5'- gAACCCgGGCGACGCGUuuugcgccagCG-GGCAGCu- -3'
miRNA:   3'- -UUGGG-CUGCUGCGCG----------GCaCCGUCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.