miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6754 5' -61.3 NC_001875.2 + 2278 0.69 0.426304
Target:  5'- cAugUUGACGucgugaugcgcGCGCGCCGUGGCcGCGc -3'
miRNA:   3'- -UugGGCUGC-----------UGCGCGGCACCGuCGUu -5'
6754 5' -61.3 NC_001875.2 + 3140 0.7 0.359583
Target:  5'- aAGCCCGcugcGCgGACGCGgCGUcgGGCGGCGAg -3'
miRNA:   3'- -UUGGGC----UG-CUGCGCgGCA--CCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 10374 0.66 0.587533
Target:  5'- cGGCCUGGCcgaaaacuuuGAacgccgcCGCGCCGUGGCgcGGCAc -3'
miRNA:   3'- -UUGGGCUG----------CU-------GCGCGGCACCG--UCGUu -5'
6754 5' -61.3 NC_001875.2 + 12090 0.66 0.58854
Target:  5'- cGCaCCGGCGGCGaGCUuUGGCGGUAc -3'
miRNA:   3'- uUG-GGCUGCUGCgCGGcACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 12668 0.67 0.557481
Target:  5'- --gUUGACG-CGCGCCGcguuggccgggugUGGCGGCAAa -3'
miRNA:   3'- uugGGCUGCuGCGCGGC-------------ACCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 12839 0.76 0.148004
Target:  5'- aAACCCGGCGGCGCcggcuagcacgcaGCCGUGGUuggucguguuGGCAAa -3'
miRNA:   3'- -UUGGGCUGCUGCG-------------CGGCACCG----------UCGUU- -5'
6754 5' -61.3 NC_001875.2 + 12966 0.67 0.538673
Target:  5'- -uCgCGGCGGgcgugggcucCGCGCCGUGGUGGCu- -3'
miRNA:   3'- uuGgGCUGCU----------GCGCGGCACCGUCGuu -5'
6754 5' -61.3 NC_001875.2 + 13748 0.7 0.344082
Target:  5'- cGCgCGGCGuCGCGCacaaagugGUGGCAGCAGu -3'
miRNA:   3'- uUGgGCUGCuGCGCGg-------CACCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 13903 0.66 0.568455
Target:  5'- aAACgCGGCGGCGCGCaCGccGGCcuGCAGc -3'
miRNA:   3'- -UUGgGCUGCUGCGCG-GCa-CCGu-CGUU- -5'
6754 5' -61.3 NC_001875.2 + 18269 0.71 0.329067
Target:  5'- uGGCCCaAUGGCGCGCCGUGcGCGaccGCGc -3'
miRNA:   3'- -UUGGGcUGCUGCGCGGCAC-CGU---CGUu -5'
6754 5' -61.3 NC_001875.2 + 20905 0.67 0.545578
Target:  5'- cAGCCCgucgcauuguucguGugGGCGCGCCaUGGcCAGCu- -3'
miRNA:   3'- -UUGGG--------------CugCUGCGCGGcACC-GUCGuu -5'
6754 5' -61.3 NC_001875.2 + 21686 0.67 0.537689
Target:  5'- cGCCCGACGagcGCGaCGCgGUGcugcgguccagccGCAGCAGg -3'
miRNA:   3'- uUGGGCUGC---UGC-GCGgCAC-------------CGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 26216 0.66 0.598632
Target:  5'- uACUCGGCGACcaGgGCCGcguaccggggcaUGGCGGCGu -3'
miRNA:   3'- uUGGGCUGCUG--CgCGGC------------ACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 26777 0.67 0.528861
Target:  5'- cACUCGuugaGCGACGCGCCGUcgagGGUGGUg- -3'
miRNA:   3'- uUGGGC----UGCUGCGCGGCA----CCGUCGuu -5'
6754 5' -61.3 NC_001875.2 + 31598 0.68 0.490329
Target:  5'- -gUCCGGCGcCGUGCCGUgGGCGGa-- -3'
miRNA:   3'- uuGGGCUGCuGCGCGGCA-CCGUCguu -5'
6754 5' -61.3 NC_001875.2 + 32450 0.68 0.471556
Target:  5'- cGACCCGcUGGCGcCGCCG-GuGCGGCGc -3'
miRNA:   3'- -UUGGGCuGCUGC-GCGGCaC-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 33584 0.68 0.453154
Target:  5'- uGCCCGagucgGCGACGUGgCGguugaacacgGGCAGCAGu -3'
miRNA:   3'- uUGGGC-----UGCUGCGCgGCa---------CCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 38286 0.66 0.578479
Target:  5'- cGCgCGuACGACGaCGCgGUGGCgAGCGc -3'
miRNA:   3'- uUGgGC-UGCUGC-GCGgCACCG-UCGUu -5'
6754 5' -61.3 NC_001875.2 + 39666 0.7 0.359583
Target:  5'- uGGgCCGGCGGCGCGC---GGCGGCGAg -3'
miRNA:   3'- -UUgGGCUGCUGCGCGgcaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 41919 0.67 0.519115
Target:  5'- uGGCCCG-CgGACGCGCCGcccuuuauaUGcGCGGCGc -3'
miRNA:   3'- -UUGGGCuG-CUGCGCGGC---------AC-CGUCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.