miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6754 5' -61.3 NC_001875.2 + 68577 0.66 0.58854
Target:  5'- cGCaCCG-CGugGCGCCGcUGGCcGCc- -3'
miRNA:   3'- uUG-GGCuGCugCGCGGC-ACCGuCGuu -5'
6754 5' -61.3 NC_001875.2 + 54716 0.67 0.528861
Target:  5'- uGCCUGGCGACGgG-CGUGGaCAGguAg -3'
miRNA:   3'- uUGGGCUGCUGCgCgGCACC-GUCguU- -5'
6754 5' -61.3 NC_001875.2 + 26777 0.67 0.528861
Target:  5'- cACUCGuugaGCGACGCGCCGUcgagGGUGGUg- -3'
miRNA:   3'- uUGGGC----UGCUGCGCGGCA----CCGUCGuu -5'
6754 5' -61.3 NC_001875.2 + 12966 0.67 0.538673
Target:  5'- -uCgCGGCGGgcgugggcucCGCGCCGUGGUGGCu- -3'
miRNA:   3'- uuGgGCUGCU----------GCGCGGCACCGUCGuu -5'
6754 5' -61.3 NC_001875.2 + 65754 0.67 0.548546
Target:  5'- gGGCCuCGGCGuauuCGUGCgCGgcgGGCGGCGg -3'
miRNA:   3'- -UUGG-GCUGCu---GCGCG-GCa--CCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 129586 0.67 0.548546
Target:  5'- uGGCCCGcaGCGACaGCcaguuGCUGcGGCAGCAAc -3'
miRNA:   3'- -UUGGGC--UGCUG-CG-----CGGCaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 38286 0.66 0.578479
Target:  5'- cGCgCGuACGACGaCGCgGUGGCgAGCGc -3'
miRNA:   3'- uUGgGC-UGCUGC-GCGgCACCG-UCGUu -5'
6754 5' -61.3 NC_001875.2 + 48050 0.66 0.578479
Target:  5'- aGGCaCGAgGGCGCGCgcuacaacgaGUGGCAGCGu -3'
miRNA:   3'- -UUGgGCUgCUGCGCGg---------CACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 10374 0.66 0.587533
Target:  5'- cGGCCUGGCcgaaaacuuuGAacgccgcCGCGCCGUGGCgcGGCAc -3'
miRNA:   3'- -UUGGGCUG----------CU-------GCGCGGCACCG--UCGUu -5'
6754 5' -61.3 NC_001875.2 + 41919 0.67 0.519115
Target:  5'- uGGCCCG-CgGACGCGCCGcccuuuauaUGcGCGGCGc -3'
miRNA:   3'- -UUGGGCuG-CUGCGCGGC---------AC-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 50017 0.68 0.490329
Target:  5'- gGGCgCG-CGugGuCGCCG-GGCGGCGAg -3'
miRNA:   3'- -UUGgGCuGCugC-GCGGCaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 31598 0.68 0.490329
Target:  5'- -gUCCGGCGcCGUGCCGUgGGCGGa-- -3'
miRNA:   3'- uuGGGCUGCuGCGCGGCA-CCGUCguu -5'
6754 5' -61.3 NC_001875.2 + 54588 0.75 0.172645
Target:  5'- cGCCCGGCGGCGCGCCcacgGcGCGGUAu -3'
miRNA:   3'- uUGGGCUGCUGCGCGGca--C-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 85341 0.75 0.172645
Target:  5'- cGCCCGccGCGAacgcCGaCGCCGUGGCGGCGu -3'
miRNA:   3'- uUGGGC--UGCU----GC-GCGGCACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 61899 0.75 0.181489
Target:  5'- uGGCCCGAC-ACGCGCCGUGucaCGGCGGa -3'
miRNA:   3'- -UUGGGCUGcUGCGCGGCACc--GUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 44000 0.74 0.205372
Target:  5'- cAGCCCGACGG-GCGCCGUGccCAGCGu -3'
miRNA:   3'- -UUGGGCUGCUgCGCGGCACc-GUCGUu -5'
6754 5' -61.3 NC_001875.2 + 42741 0.72 0.286961
Target:  5'- cGCgCGGCGACGCGCaugGUGaGCGGCGc -3'
miRNA:   3'- uUGgGCUGCUGCGCGg--CAC-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 128696 0.71 0.314542
Target:  5'- cGCCCGACGcCGCGuCCGc-GCAGCGGg -3'
miRNA:   3'- uUGGGCUGCuGCGC-GGCacCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 39666 0.7 0.359583
Target:  5'- uGGgCCGGCGGCGCGC---GGCGGCGAg -3'
miRNA:   3'- -UUgGGCUGCUGCGCGgcaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 85660 0.68 0.462306
Target:  5'- uAGCUuaauUGugGGCGCGCCGgccuGCAGCGAc -3'
miRNA:   3'- -UUGG----GCugCUGCGCGGCac--CGUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.