Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6754 | 5' | -61.3 | NC_001875.2 | + | 102761 | 1.03 | 0.001694 |
Target: 5'- gAACCCGACGACGCGCCGUGGCAGCAAc -3' miRNA: 3'- -UUGGGCUGCUGCGCGGCACCGUCGUU- -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 2278 | 0.69 | 0.426304 |
Target: 5'- cAugUUGACGucgugaugcgcGCGCGCCGUGGCcGCGc -3' miRNA: 3'- -UugGGCUGC-----------UGCGCGGCACCGuCGUu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 61603 | 0.69 | 0.435149 |
Target: 5'- gGGCgCCGGCGGCGCuucggGCUGUgucGGCGGCGc -3' miRNA: 3'- -UUG-GGCUGCUGCG-----CGGCA---CCGUCGUu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 12090 | 0.66 | 0.58854 |
Target: 5'- cGCaCCGGCGGCGaGCUuUGGCGGUAc -3' miRNA: 3'- uUG-GGCUGCUGCgCGGcACCGUCGUu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 83317 | 0.73 | 0.249214 |
Target: 5'- uACCCG-CGgggcGCGCGCCG-GGCGGCGc -3' miRNA: 3'- uUGGGCuGC----UGCGCGGCaCCGUCGUu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 92630 | 0.73 | 0.255208 |
Target: 5'- aAACCCGACGACGUGgCGguuGUAGCGg -3' miRNA: 3'- -UUGGGCUGCUGCGCgGCac-CGUCGUu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 80871 | 0.72 | 0.293673 |
Target: 5'- cGACUCGGCG-CGCGCCaaagaGUGGCagAGCAAg -3' miRNA: 3'- -UUGGGCUGCuGCGCGG-----CACCG--UCGUU- -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 18269 | 0.71 | 0.329067 |
Target: 5'- uGGCCCaAUGGCGCGCCGUGcGCGaccGCGc -3' miRNA: 3'- -UUGGGcUGCUGCGCGGCAC-CGU---CGUu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 3140 | 0.7 | 0.359583 |
Target: 5'- aAGCCCGcugcGCgGACGCGgCGUcgGGCGGCGAg -3' miRNA: 3'- -UUGGGC----UG-CUGCGCgGCA--CCGUCGUU- -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 69261 | 0.69 | 0.408938 |
Target: 5'- gGGCCgCGGCu-CGaGCCGUGGCGGCGg -3' miRNA: 3'- -UUGG-GCUGcuGCgCGGCACCGUCGUu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 94697 | 0.69 | 0.392021 |
Target: 5'- gAACCCGGCGAUGCGCaCGcGGaaagacGCAAa -3' miRNA: 3'- -UUGGGCUGCUGCGCG-GCaCCgu----CGUU- -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 81980 | 0.7 | 0.359583 |
Target: 5'- uGGCgCCGGCaaGGCGCGCCGgccGGCGcGCAAa -3' miRNA: 3'- -UUG-GGCUG--CUGCGCGGCa--CCGU-CGUU- -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 12839 | 0.76 | 0.148004 |
Target: 5'- aAACCCGGCGGCGCcggcuagcacgcaGCCGUGGUuggucguguuGGCAAa -3' miRNA: 3'- -UUGGGCUGCUGCG-------------CGGCACCG----------UCGUU- -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 77657 | 0.69 | 0.392021 |
Target: 5'- gAACCCgGGCGACGCGUuuugcgccagCG-GGCAGCu- -3' miRNA: 3'- -UUGGG-CUGCUGCGCG----------GCaCCGUCGuu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 98622 | 0.73 | 0.231929 |
Target: 5'- cGCCCGGCGAgccCGCGCCcgcGUuugccGGCAGCGAg -3' miRNA: 3'- uUGGGCUGCU---GCGCGG---CA-----CCGUCGUU- -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 13748 | 0.7 | 0.344082 |
Target: 5'- cGCgCGGCGuCGCGCacaaagugGUGGCAGCAGu -3' miRNA: 3'- uUGgGCUGCuGCGCGg-------CACCGUCGUU- -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 83588 | 0.69 | 0.400422 |
Target: 5'- -uCCCGGCGGgGCGCCGccGUAGCu- -3' miRNA: 3'- uuGGGCUGCUgCGCGGCacCGUCGuu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 124868 | 0.69 | 0.426304 |
Target: 5'- uGCCCGcuguucaaGCaGCGCGCCGUGGCGaugucGCGg -3' miRNA: 3'- uUGGGC--------UGcUGCGCGGCACCGU-----CGUu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 77253 | 0.73 | 0.249214 |
Target: 5'- cGCgCCGugGGCGCGCCGccgGGCgaAGCGg -3' miRNA: 3'- uUG-GGCugCUGCGCGGCa--CCG--UCGUu -5' |
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6754 | 5' | -61.3 | NC_001875.2 | + | 112710 | 0.72 | 0.28037 |
Target: 5'- --gCUGACGGCGcCGCCGUGGUAGgCGc -3' miRNA: 3'- uugGGCUGCUGC-GCGGCACCGUC-GUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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